Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02061 ATGCACACACAACACAAACTACAACTGCTTTCCAAGGATCAGATGATCATCATCAAAAAGCGTCAGAGGGCACCCTCCCCTCCTGCCTTTGCCAACCCTACTTCAACCTCCATTGATAGTGCCACAACCTCCTCCTCCACCACCACCACCACCCCATTTGAATCAATAGAAGAAGAACAAGACATGGTCAATTGTCTCATTCTCCTGGCTCAAGGCACACACCACGTGTCACCAGATCGAAACATCAACCACAAAAGGTCAACAAACCCTCGAGTCTTCCGGTGCAAGACTTGCAACAAATGCTTCCCTTCCTTCCAGTCACTTGGAGGACACAGAACCAGCCACAGGAAGCCCAAGCACTACGCCACTCATGTAGAAGCACTTACTGCTACTTCTGTTAGAGACAGTATTGATCTCACCACAACCACCACTCTCTCCTTGAAACCACCAACTAGGGTTAATGATTTTACCATCGCCACCAGAGTTCACCGCTGTTCCACCTGTTATGCTGAATTCTCATCTGGGCAAGCCTTGGGAGGCCACATGAGGCGCCACAGAAATGTTGTCAATGTTTCTTCAGCAACGTCCATCAGTGGTGATGCTGGTGGTAGCCTAGAATACCATGGACCTAAGAAACCATTGAATTTGGACTTGAATATTCCTGCACCAGAGGAAGACCAAGGAGAGTCCAGGTTTTCGTTTCTGCAACCACAAAACGTTATCGTCTTCTCTTCTTCTTTGGTGAACTGCAATTACTGA 759 0.4769 MHTQHKLQLLSKDQMIIIKKRQRAPSPPAFANPTSTSIDSATTSSSTTTTTPFESIEEEQDMVNCLILLAQGTHHVSPDRNINHKRSTNPRVFRCKTCNKCFPSFQSLGGHRTSHRKPKHYATHVEALTATSVRDSIDLTTTTTLSLKPPTRVNDFTIATRVHRCSTCYAEFSSGQALGGHMRRHRNVVNVSSATSISGDAGGSLEYHGPKKPLNLDLNIPAPEEDQGESRFSFLQPQNVIVFSSSLVNCNY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02061 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 185 IPR013087 -
Vian3g02061 252 SUPERFAMILY beta-beta-alpha zinc fingers 160 187 IPR036236 -
Vian3g02061 252 Gene3D Classic Zinc Finger 91 185 - -
Vian3g02061 252 MobiDBLite consensus disorder prediction 28 52 - -
Vian3g02061 252 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vian3g02061 252 Pfam C2H2-type zinc finger 162 186 - -
Vian3g02061 252 Pfam C2H2-type zinc finger 92 118 - -
Vian3g02061 252 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Vian3g02061 252 SMART c2h2final6 93 115 IPR013087 -
Vian3g02061 252 SMART c2h2final6 163 185 IPR013087 -
Vian3g02061 252 SUPERFAMILY beta-beta-alpha zinc fingers 88 122 IPR036236 -
Vian3g02061 252 MobiDBLite consensus disorder prediction 22 52 - -
Vian3g02061 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Vian3g02061 252 PANTHER ZINC FINGER PROTEIN ZAT5 21 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02061 Vian-Chr3 26537766 26538524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02061 15 252 C2H2 Transcription Factor Family AT5G03510 35.540 6.74e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g02061 zf-C2H2_6 6.3e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02061 3 26537766 26538524 Vian2g02399 2 44458059 44458838 ECH
Vian3g02061 3 26537766 26538524 Vian3g02061 3 26537766 26538524 ECH
Vian3g02061 3 26537766 26538524 Vian11g00525 11 5233571 5234488 ECH
Vian2g02399 2 44458059 44458838 Vian3g02061 3 26537766 26538524 PCT