Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02059 ATGTTTCAAGCAACCTACATTTTGCTCTTCTTCTCCGTTCTGTCCTCGTTTTTACCACATGGAACAGCAGCATTCAACCTCACTCTCCCAGGGCAACATCCAGACCCGGAAGCTGTTGCCACACAAGTTCATAGGAGGGTGAATGCTTCAATGGGAAGAAGGGAAATGCTGAGATTGTCAGAGAAAGATGTGGCATCATGTCTTACAGGTAACCCGATTGATGATTGTTGGAAGTGTGACCCAGATTGGGCCAACAACAGACAGAGACTGGCTGATTGTGGAATTGGGTTTGGGCAGAACGCAAAGGGTGGAAAAGGTGGAGAATTTTACATAGTCACGGATTCATCTGATGAGGACCCTGTGAACCCAAAACCAGGAACACTTAGATATGCAGTGATACGGAATGAACCACTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTCTCTCAGGAACTCATTTTCAATAGTTACAAAACCATTGATGGCCGTGGTGCTGATGTGCACATCGTGGGTGGAGGTTGCATCACTCTTCAGTATATTAGCAATGTCATTATTCACAACATTCACATCCACCATTGCCATCCTTCTGGTTACATTCACGTGGTGAACAACGACTTCACGCGATGGGAGATGTACGCGATCGGGGGAAGTGGGAGGCCTACTATTAACAGCCAGGGGAACCGCTACACTGCGCCGGAGGATCCGTACGCAAAGCAGATTACGAAGAGGCTGGACGCCGGAGAAGGGGAGTGGAGCGGCTGGAATTGGAGGTCGGAAGGGGATGTGATGCTGAACGGCGCGTTTTTCGTGGCCTCAGGAGGTGAGGCCGGCACTGACTACCAAAATGCGTACAGCGTTGAGCCTAAGAACGTGGATCGTATCTCGCTTCTCACCATGTCCGCCGGTGTGCTCGGCGTTGCCAGATTACAGAACAAACGTGATATTTTGGCGGAAGTACTCAACGTGAAAGCAAAACACAATACAAGATAA 996 0.491 MFQATYILLFFSVLSSFLPHGTAAFNLTLPGQHPDPEAVATQVHRRVNASMGRREMLRLSEKDVASCLTGNPIDDCWKCDPDWANNRQRLADCGIGFGQNAKGGKGGEFYIVTDSSDEDPVNPKPGTLRYAVIRNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGYIHVVNNDFTRWEMYAIGGSGRPTINSQGNRYTAPEDPYAKQITKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGEAGTDYQNAYSVEPKNVDRISLLTMSAGVLGVARLQNKRDILAEVLNVKAKHNTR 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02059 331 Gene3D - 200 307 IPR012334 -
Vian3g02059 331 Gene3D - 70 199 IPR012334 -
Vian3g02059 331 PANTHER PECTATE LYASE 18-RELATED 31 198 IPR045032 GO:0030570
Vian3g02059 331 SMART amb_all 145 237 IPR002022 -
Vian3g02059 331 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Vian3g02059 331 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Vian3g02059 331 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Vian3g02059 331 SUPERFAMILY Pectin lyase-like 91 308 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02059 Vian-Chr3 26420847 26428344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02059 199 313 Polysaccharide Lyase AT3G53190 66.957 2.43e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02059 K01728 - gmx:100815062 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02059 3 26420847 26428344 Vian3g02059 3 26420847 26428344 ECH
Vian2g02395 2 44410673 44412844 Vian3g02059 3 26420847 26428344 PCT