Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02054 ATGTCTACCTCTGCAACTTCTCTTGCACTCCCAACTCTCACTCTCAGAACACATCACCCTCTCTCTTCTCCCAAATCCTTCTCTTCTTCTCTTTCCCTCACCCCTAACGCCAAACCCATCTCCATTTCTACCGTTTTCCTCAAACCCACTTTCTCCCTCTCCTCCCGCTTCCTTCCCCGCGTCGCCGTCTCCTCCGACTACGACCAGCAAGAGGACACCTTCACCTCCGCCCAGAGCTTCTCTCCCGACCTTAAGGTCTTTGTCGGCAACCTTCCGTTCAGTGTCGACAGTGCGCAGCTCGCAGACCTCTTCGAAAGCGTTGGGATTGTGGAGGTCGTCGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGCTTTGGGTTTGTCACAATGTCTTCGGTTGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATATTGGTGTTGTTGTAAGAAATGAGGAACTGGATGGAAGGGCCCTTAGAGTGAATGCTGGGCCACCCCCTGCTCGGAATGAGAGTTCATCTCGTGTTAGAAGTTCTAACAGAGTTGGTGGTGGTGGTGGTGGTGGTGGTTTTTCAGATAGTAAAAACAAAGTCCATGTGGGTAATCTTGCTTGGGGTGTTGACCATGTAGCATTGGAGTCATTGTTTCGGGAACAAGGAAATGTCGTGGAAGCAAGGGTAGTCTATGACAGGGATAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTGCCGATGAAGTCAGCAGTGCAATTGAGTCCTTGGATGGTGTGGACTTGAATGGCAGACCTATACGAGTCTCATTAGCAGACTCGAAGCCCAGGATGTCTTGA 852 0.5035 MSTSATSLALPTLTLRTHHPLSSPKSFSSSLSLTPNAKPISISTVFLKPTFSLSSRFLPRVAVSSDYDQQEDTFTSAQSFSPDLKVFVGNLPFSVDSAQLADLFESVGIVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAVQQFNGYIGVVVRNEELDGRALRVNAGPPPARNESSSRVRSSNRVGGGGGGGGFSDSKNKVHVGNLAWGVDHVALESLFREQGNVVEARVVYDRDSGRSRGFGFVTYSSADEVSSAIESLDGVDLNGRPIRVSLADSKPRMS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02054 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 148 IPR000504 GO:0003723
Vian3g02054 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 272 IPR000504 GO:0003723
Vian3g02054 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Vian3g02054 283 CDD RRM2_NsCP33_like 201 276 - -
Vian3g02054 283 SUPERFAMILY RNA-binding domain, RBD 197 281 IPR035979 GO:0003676
Vian3g02054 283 MobiDBLite consensus disorder prediction 163 197 - -
Vian3g02054 283 Gene3D - 62 196 IPR012677 -
Vian3g02054 283 Gene3D - 197 283 IPR012677 -
Vian3g02054 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 170 IPR000504 GO:0003723
Vian3g02054 283 SMART rrm1_1 201 274 IPR000504 GO:0003723
Vian3g02054 283 SMART rrm1_1 85 166 IPR000504 GO:0003723
Vian3g02054 283 FunFam 28 kDa ribonucleoprotein, chloroplastic 193 281 - -
Vian3g02054 283 PANTHER OS02G0815200 PROTEIN 18 278 - -
Vian3g02054 283 SUPERFAMILY RNA-binding domain, RBD 75 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02054 Vian-Chr3 26292166 26294084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02054 174 280 Eukaryotic Initiation Factors Gene Family AT4G34110 31.776 1.46e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02054 - - var:108324910 442.965