Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02051 ATGTCTACCTCTGCAACTTCTCTTGCACTCCCAACTCTCACTCTCAGAACACATCACCCTCTCTCTTCTCCCAAATCCTTCTCTTCTTCTCTTTCCCTCACCCCTAACGCCAAACCCATCTCCATTTCTACCGTTTTCCTCAAACCCACTTTCTCCCTCTCCTCCCGCTTCCTTCCCCGCGTCGCCGTCTCCTCCGACTACGACCAGCAAGAGGACACCTTCACCTCCGCCCAGAGCTTCTCTCCCGACCTTAAGGTCTTTGTCGGCAACCTTCCGTTCAGTGTCGACAGTGCGCAGCTCGCAGACCTCTTCGAAAGCGTTGGGATTGTGGAGGTCGTCGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGCTTTGGGTTTGTCACAATGTCTTCGGTTGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCCTTAGAGTGAATGCTGGGCCACCCCCTGCTCGGAATGAGAGTTCATCTCGTGTTAGAAGTTCTAACAGAGTTGGTGGTGGTGGTGGTTTTTCAGATAGTAAAAACAAAGTCCATGTGGGTAATCTTGCTTGGGGTGTTGACCATGTAGCATTGGAGTCATTGTTTCGGGAACAAGGAAATGTCGTGGAAGCAAGGGTAGTCTATGACAGGGATAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTGCCGATGAAGTCAGCAGTGCAATTGAGTCCTTGGATGGTGTGGACTTGAATGGCAGACCTATACGAGTCTCATTAGCAGACTCGAAGCCCAGGATGTCTTGA 819 0.5067 MSTSATSLALPTLTLRTHHPLSSPKSFSSSLSLTPNAKPISISTVFLKPTFSLSSRFLPRVAVSSDYDQQEDTFTSAQSFSPDLKVFVGNLPFSVDSAQLADLFESVGIVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAVQQFNGYELDGRALRVNAGPPPARNESSSRVRSSNRVGGGGGFSDSKNKVHVGNLAWGVDHVALESLFREQGNVVEARVVYDRDSGRSRGFGFVTYSSADEVSSAIESLDGVDLNGRPIRVSLADSKPRMS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02051 272 SMART rrm1_1 190 263 IPR000504 GO:0003723
Vian3g02051 272 SMART rrm1_1 85 158 IPR000504 GO:0003723
Vian3g02051 272 MobiDBLite consensus disorder prediction 156 186 - -
Vian3g02051 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Vian3g02051 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 261 IPR000504 GO:0003723
Vian3g02051 272 Gene3D - 62 185 IPR012677 -
Vian3g02051 272 Gene3D - 186 272 IPR012677 -
Vian3g02051 272 PANTHER OS02G0815200 PROTEIN 18 267 - -
Vian3g02051 272 SUPERFAMILY RNA-binding domain, RBD 75 184 IPR035979 GO:0003676
Vian3g02051 272 FunFam 28 kDa ribonucleoprotein, chloroplastic 184 270 - -
Vian3g02051 272 FunFam Ribonucleoprotein A, chloroplastic 63 183 - -
Vian3g02051 272 SUPERFAMILY RNA-binding domain, RBD 186 270 IPR035979 GO:0003676
Vian3g02051 272 MobiDBLite consensus disorder prediction 163 182 - -
Vian3g02051 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Vian3g02051 272 CDD RRM2_NsCP33_like 190 265 - -
Vian3g02051 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02051 Vian-Chr3 26240019 26241928 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02051 166 269 Eukaryotic Initiation Factors Gene Family AT4G34110 32.381 3.78e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02051 - - var:108324910 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02051 3 26240019 26241928 Vian3g02051 3 26240019 26241928 ECH
Vian2g02313 2 43520583 43527600 Vian3g02051 3 26240019 26241928 PCT