Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02049 ATGGCTCTCACAGTGGTTTCAAATATATTTTTTTGGGTTGTTATTGTTGTATACCGCAACTGTAGTGGTGTTGTTACGGTGGCTAGTGACAACGACCATGGGAAGTGGACCGCGAAGATTCGTGACCCGAAGAAAGCAACCAGAGTTTGGCTGGGAACTTTTCCCACCGCGGAGGCTGCTGCACTTGCTTACAGTGAAGCAACTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTTCCAGAAAAAGTTCATCTCTCAGGGGAATTAGGTTACCTCACAAATCGTCCACCATCGTTACAAGCCTCTTCAACTCCCTTCCAATTGCTTCCTCGTCACACTACAACTGATAATGATGTCATTCTCTTTTCCTCTTCTTCGCCATCGTCTTCAACCTTTTCGATGAACTCCGCAGCTTCTTCTTCCGAGCCTCCTACCAAACAGAAACCTGATTTCGATGCCAATGTTTATATTAAATTACGCAATATATATGCTTATCTTATAATCTTTATCAGAGACCAATGTTTATTATGTATGGTGTCAAGGAAATAA 552 0.4239 MALTVVSNIFFWVVIVVYRNCSGVVTVASDNDHGKWTAKIRDPKKATRVWLGTFPTAEAAALAYSEATLRFKGSKAKLNFPEKVHLSGELGYLTNRPPSLQASSTPFQLLPRHTTTDNDVILFSSSSPSSSTFSMNSAASSSEPPTKQKPDFDANVYIKLRNIYAYLIIFIRDQCLLCMVSRK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02049 183 Gene3D AP2/ERF domain 22 83 IPR036955 GO:0003700|GO:0006355
Vian3g02049 183 ProSiteProfiles AP2/ERF domain profile. 20 81 IPR001471 GO:0003700|GO:0006355
Vian3g02049 183 CDD AP2 34 82 IPR001471 GO:0003700|GO:0006355
Vian3g02049 183 SMART rav1_2 34 87 IPR001471 GO:0003700|GO:0006355
Vian3g02049 183 SUPERFAMILY DNA-binding domain 32 82 IPR016177 GO:0003677
Vian3g02049 183 PANTHER DNA-BINDING DOMAIN 34 141 IPR044808 GO:0003700|GO:0009873
Vian3g02049 183 MobiDBLite consensus disorder prediction 127 148 - -
Vian3g02049 183 Pfam AP2 domain 30 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02049 Vian-Chr3 26162038 26166916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02049 34 124 AP2-EREBP Transcription Factor Family AT5G61890 56.522 2.65e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian3g02049 AP2 1.8e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02049 - - vra:106766671 201.445