Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02046 ATGGACGCAACACTCCCCAATGGTAAAGACGCTTTCTGCGTCACCGCCGCCAATGCCGCGGGGGACCCGCTCAACTGGGCCGCCGCGGCCGACGCGCTCTCGGGTAGCCATCTCGACGAGGTCAAGCGCATGGTCGCCGACTACCGCAAGCCCGCCGTCCGCCTCGGCGGCGAGACGCTCACCGTCGCTCAGGTGGCGGCGATTGCGGCGCACGACCAGGGTCTCAAGGTGGAGCTGGCGGAGGCTGCCAGGGCCGGCGTCAAGGCCAGCAGTGACTGGGTCATGGACAGCATGGACAAGGGTACCGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACCTCCCACCGCCGTACCAAACAAGGTGGTGCCTTGCAGAAGGAGCTTATCAGGTTTTTGAATGCTGGGATATTTGGCAATGGTACAGAGGCGAATTGCACCCTACCCCACACTGCAACTAGAGCAGCTATGCTTGTGAGAGTGAACACTCTTCTCCAAGGGTACTCTGGAATCAGATTTGAAATTTTGGAGGCCATCACCAATCTTTTGAACAACAACGTTACTCCATGTTTGCCACTTAGGGGAACAATCACAGCATCTGGTGATCTTGTACCTTTGTCGTACATTGCCGGTTTGTTAACCGGCAGACCAAACTCGAAGGCTGTGGGTCCCTCTGGGGAGATTCTGAATGCCAAGGAAGCCTTTGAATTGGCCAACATTGGTTCTGAGTTCTTTGAGTTGCAACCTAAGGAAGGGCTTGCCCTTGTGAATGGTACGGCTGTTGGCTCTGGCTTGGCCTCCATAGTTCTCTTTGAAGCGAACATTCTGGCTGTCTTGTCGGAAGTTATTTCAGCAGTTTTTGCTGAAGTTATGCAAGGAAAGCCCGAGTTCACTGATCATTTGACTCACAAGCTAAAGCACCATCCTGGCCAGATTGAGGCTGCAGCTATCATGGAACACATTTTGGATGGAAGCTCTTACATCAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTGCAGAAACCTAAACAAGACCGCTATGCCCTTAGGACTTCACCCCAATGGCTTGGTCCTCAAATCGAAGTGATCAGGTTTTCTACCAAGTCCATTGAGAGGGAGATAAATTCAGTCAACGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCCTTGCATGGTGGTAACTTCCAAGGAACTCCAATTGGAGTCTCCATGGATAACACCCGTTTGGCTCTTGCTTCCATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTATTACAATAATGGGTTGCCTTCAAATCTCACTGCCAGCAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTACTGCTCTGAACTCCAATATTTGGCTAACCCTGTGACCAGCCATGTCCAAAGCGCGGAGCAACACAACCAAGATGTGAACTCTTTGGGATTGATTTCGTCTAGGAAGACCAATGAGGCTGTTGAGATCCTCAAGCTAATGTCTTCAACTTTCCTCGTTGCACTTTGCCAGGCCATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACTGTGAAGAATGTCGTGAGCCAAGTTGCCAAGAGGACTCTCACCACAGGTGTCAATGGAGAACTTCATCCTTCAAGATTTTGTGAGAAAGACTTGTTGAAAGTTGTTGATAGAGAATACACATATGCCTACATTGACGATCCCTGCAGTGGCACATACCCTTTGATGCAAAAACTAAGGCAAGTTCTTGTGGAATATGCATTGGCTAATGGAGAAAACGAGAAAAACTTGAACACGTCGATCTTCCAAAAGATTGCGTCCTTTGAGGAGGAGTTGAAAGCCCTCTTGCCTAAGGAAGTGGAAGGTGCAAGACTTGCATATGAGAATGACCAATGTGCAGTTCCCAACAAGATCAAGGAATGTAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTAGGGACATCGTTGCTGACTGGTGAAAAGGTCATCTCACCCGGTGAAGAGTGTGACAAGGTGTTCACTGCTATGTGCCAAGGGAAAATCATTGATCCTCTTTTGGAATGCCTTGGAGAGTGGAATGGTGCTCCGCTTCCAATTTCTTAG 2142 0.4935 MDATLPNGKDAFCVTAANAAGDPLNWAAAADALSGSHLDEVKRMVADYRKPAVRLGGETLTVAQVAAIAAHDQGLKVELAEAARAGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTEANCTLPHTATRAAMLVRVNTLLQGYSGIRFEILEAITNLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAVEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTYAYIDDPCSGTYPLMQKLRQVLVEYALANGENEKNLNTSIFQKIASFEEELKALLPKEVEGARLAYENDQCAVPNKIKECRSYPLYKFVREELGTSLLTGEKVISPGEECDKVFTAMCQGKIIDPLLECLGEWNGAPLPIS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02046 713 Pfam Aromatic amino acid lyase 60 540 IPR001106 -
Vian3g02046 713 Gene3D - 13 259 IPR024083 -
Vian3g02046 713 NCBIfam phenylalanine ammonia-lyase 22 702 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vian3g02046 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Vian3g02046 713 Gene3D - 526 647 IPR023144 -
Vian3g02046 713 SUPERFAMILY L-aspartase-like 22 712 IPR008948 GO:0003824
Vian3g02046 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
Vian3g02046 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Vian3g02046 713 FunFam Phenylalanine ammonia-lyase 260 568 - -
Vian3g02046 713 CDD PAL-HAL 58 523 IPR001106 -
Vian3g02046 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Vian3g02046 713 PANTHER HISTIDINE AMMONIA-LYASE 21 712 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02046 Vian-Chr3 26093421 26097419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02046 20 712 Monolignol Biosynthesis Gene Families AT2G37040 83.550 0.0 1231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02046 K10775 - gmx:100803857 1328.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02046 3 26093421 26097419 Vian3g00860 3 9213488 9217616 ECH
Vian3g02046 3 26093421 26097419 Vian3g02046 3 26093421 26097419 ECH