Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02043 ATGAATGAGCGAGGATGCTATTCAACACAACATGAGATGGATCGTGAAGACTATTTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTACCTGCTCTTCAAGATGGAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAACAATCTTGCTCCCCAGGATGGTAGCTTGAATTCTCATACAACTTTGAACAGCAAGGATGATTTGGAACTGGAGGTACTTGATGGATTGCTAGATGATGTGGAAATTGATGATCTTGAAGGAGCTGATGGTTTCCCGGGTGCATGTGAAGAATATTTTTTTGATTTTGGATTTGCTGACAAATTTGAGGAGGTACTGGGTTCTGGTCCTTTTGAAGGTTCGGAAAGTCATTCGTCAGGATTAAGTAGAAGTAGCATTGTTGGTGGGGTTTTAGAATCAACAGAAGTACCTATTGCACACTCTGAAAGCAAAAATGATTCTCTGGATGAGACAGTAACCTATGAATCACATGGTGCCTTCAGCAACAATCCTAGTCAACCATCACAAGGAAATTGCAGGTACAACATTTCACTTGATATACAGCATCTGCAAGAGTTGGATAACTATCGTCATTTAGCTGGTGGTATACTGACTTGTAAGAAGGACAAGGGTCCTGTCGAGAAAGGCCAACCTGCTGCACTTAGAGAGAAAAGGTTCCGGAAGCCTACGCAAAGGTATATTGAAGAATTTTCAAATGCGAGGTCAAAGGAAAAGGTACCACCTGCTGGTACAAAAACTAAACATTCGAGTAACTCATCATGTAATGTACTTCATATAAGAATTAAATCATCGAAAAGGAGTCCAAGCGAGAAGTCTAGTAATGAAAATAGTGAGGTGATGCTTCCTGAGTTGCAAGTTAGCAAAGGGCATCAGAAGAAAGAGAAACTTCAGTATGAGTATGAATCATTTCCCTCGGAATCTGAGGATGGATGTTCAACCACAAAAAGGTCTAGAAGAAAAGATAGAAGAAAGCATCAGAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATATGGAGTTGGTCGTTGGACTGATATTAAGAAGTTTTTGTTTTCTTCTTCAAGCTACAGAACTCCCATAGATCTCAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGTGCAGAAAAACAAGAAAGAGGTTGAGCAAAATGACGAGTTAGCCCTGCGTCCCTTACCATTTAATGTGGTACACCGTGTGCGAGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGGTCAGAGAAGTTACGTGTTAGCCAAGCTGGTCCCTCTGTCGTCGCAGATTCTCCTCCCGTTAGTCTTAGCAAAAGAAATGTACGTAGAAAGTTTACTTAG 1407 0.4151 MNERGCYSTQHEMDREDYLRKCSNMKCQRVQVDESYVPALQDGVMEVEHLLAEPRNNLAPQDGSLNSHTTLNSKDDLELEVLDGLLDDVEIDDLEGADGFPGACEEYFFDFGFADKFEEVLGSGPFEGSESHSSGLSRSSIVGGVLESTEVPIAHSESKNDSLDETVTYESHGAFSNNPSQPSQGNCRYNISLDIQHLQELDNYRHLAGGILTCKKDKGPVEKGQPAALREKRFRKPTQRYIEEFSNARSKEKVPPAGTKTKHSSNSSCNVLHIRIKSSKRSPSEKSSNENSEVMLPELQVSKGHQKKEKLQYEYESFPSESEDGCSTTKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKKFLFSSSSYRTPIDLRDKWRNLLRASSVQKNKKEVEQNDELALRPLPFNVVHRVRELAKIHPYPRQRGSEKLRVSQAGPSVVADSPPVSLSKRNVRRKFT 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02043 468 MobiDBLite consensus disorder prediction 244 340 - -
Vian3g02043 468 SMART sant 340 393 IPR001005 -
Vian3g02043 468 Gene3D - 329 441 - -
Vian3g02043 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 335 395 IPR017930 -
Vian3g02043 468 CDD SANT_TRF 342 392 - -
Vian3g02043 468 MobiDBLite consensus disorder prediction 302 317 - -
Vian3g02043 468 MobiDBLite consensus disorder prediction 259 277 - -
Vian3g02043 468 MobiDBLite consensus disorder prediction 244 258 - -
Vian3g02043 468 SUPERFAMILY Homeodomain-like 343 411 IPR009057 -
Vian3g02043 468 MobiDBLite consensus disorder prediction 435 455 - -
Vian3g02043 468 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 15 445 - -
Vian3g02043 468 ProSiteProfiles Myb-like domain profile. 336 391 IPR001005 -
Vian3g02043 468 Pfam Myb-like DNA-binding domain 343 391 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02043 Vian-Chr3 25948924 25955380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02043 340 403 Single Myb Histone (SMH) Gene Family AT1G17520 38.806 2.10e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian3g02043 Myb_DNA-binding 9.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02043 - - gmx:100810255 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02043 3 25948924 25955380 Vian3g02043 3 25948924 25955380 ECH