Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02042 ATGGCACTAAATAAAGAATCAGTCCATGCTTCGGAAAAGCCGAATAGAGCAACAAAAGAGAAGTCAGAAGCAATTTTCCCTGCAACAAAATGTGAAGAGGCAAATCGTCCTAAGAGAGGCACAAATAAAGCAGAAATACAGAAAACGTCTTCGCTGTTAGTAAAGACTCAAGCAAGAGAATGTGCTGCTGGTAAAGCCAATGCCACAGTTAATAAATACGCAGGCGATGCTGGTGACAGAACTGAGACTTTGGATGATGAAACCGAAGATCCAGATGACAAACTTAAAAATGTGTTAGGAGTGGCACCTGAAGAAGAATTGGTTCATCCTTCCAAAAAACGAGATAAATCCACTAAGGTTCACCCTTCAAGAAAACAAGATAAATCTACAGAAGAGAAGCCAGAAGCAATTTGTCCCGCGCCAAAATGTGACGAGGCAATGCCTCCTCAAGGTGTCACAAATAAAACCGAAAAACAGAAGCCATCTTCACTGGTAGTAAGGAAACGTCCTGCTGGTAAAGCCAAGGCCACAGTTGCCAAGCATTTATCGAAACCTAAAGTTGTAGTATCTACGGAGAAGATTCCTAATGAAACGGGGCACGAGGCAGAGATAGAAACTGTGGAAGAAATGCCCTCTTCTGCTGATAAACGTGACAAGTCGGCCTTAGCAAGAAATAAGTCAGAGACTTTAGCTGAAGAAGAGAAGGAGAATAGACCAATTGATTTAATGCAGGATCCTGTGAAGGGCAGAAGCAATGGCAAATCAACCAATAAATGTAATGTAAGGCGAACAAATATCAAGTCGACTAAAGTGGGGCCCATTCCATCTATATCAGAATCTAACACGAGAGTAAAAACTGAAGCGGCATATTTTATATTAAGCGGTCACCGTCTACAGAGAAAAGAGTTTGAGCAAGTAATCAAGCGCTTAAGTGGAAGGGTTTGCGGGGTTTCTTCTCACAAGTGGTCATATCAGGCGACACACTTCATAGCTCCAGACCCCTTACGCAGGACTGAGAAATTCTTTGCCGCGGCTGCATCAGGAAGGTGGATTCTGAATACGGATTACCTAACTGCCAGCAGTCAGGAAGGAAGACTCTTGGCGGAGGAGCCGTATGAGTGGCACAGGAATGGTCTCAGTGAGGATGGAGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTAGTTAAAGAAAAAACAGGTCATGGCGCCTTCTATGGAATGCGTATTGTTGTATACGGTGATTGCATTGCTCCGCCTTTGGATACTCTTAAACGTGTCATCAAAGCTGGCGATGGAACAATATTAGCGACTTCTCCTCCTTATACAAAATTCATTGGGACCGGAGTCGACTATGCTGTAGTTAGCCCTGGCATGCCACATGTTGATATCTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTATTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTCGGGAAGCATGTGTTATACGGCTCTCATGTTTGGGCAGAGAAATCCTTTGATAAACTTAAAAGCAAAGCAGAAGAGATTGTTGCTCCTGAGGATTTGAGTAGTGATGATGATGATGATGATAATGATAATGATATAACTTGCCAAGTGTGTGGATCCCGCGACAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCTGTTGGGTGTGGAGTGGGTACCCACATCGATTGCTGCGATCCTCCGCTAACAGACGTCCCTGAGGACGACTGGTTTTGTTCAAAATGCAGTACCACCCGAAACTCCTCAAACAATCCCACTAAAAGGAAAAAGAATGTTTTATCATAA 1830 0.4388 MALNKESVHASEKPNRATKEKSEAIFPATKCEEANRPKRGTNKAEIQKTSSLLVKTQARECAAGKANATVNKYAGDAGDRTETLDDETEDPDDKLKNVLGVAPEEELVHPSKKRDKSTKVHPSRKQDKSTEEKPEAICPAPKCDEAMPPQGVTNKTEKQKPSSLVVRKRPAGKAKATVAKHLSKPKVVVSTEKIPNETGHEAEIETVEEMPSSADKRDKSALARNKSETLAEEEKENRPIDLMQDPVKGRSNGKSTNKCNVRRTNIKSTKVGPIPSISESNTRVKTEAAYFILSGHRLQRKEFEQVIKRLSGRVCGVSSHKWSYQATHFIAPDPLRRTEKFFAAAASGRWILNTDYLTASSQEGRLLAEEPYEWHRNGLSEDGAINMEAPRKWRLVKEKTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTKFIGTGVDYAVVSPGMPHVDIWVQEFLKHEIPCVVADYLVEYVCKPGFSLGKHVLYGSHVWAEKSFDKLKSKAEEIVAPEDLSSDDDDDDNDNDITCQVCGSRDRGDVMLICGDESGSVGCGVGTHIDCCDPPLTDVPEDDWFCSKCSTTRNSSNNPTKRKKNVLS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02042 609 CDD BRCT_TopBP1_rpt7 290 364 - -
Vian3g02042 609 ProSiteProfiles BRCT domain profile. 291 374 IPR001357 -
Vian3g02042 609 MobiDBLite consensus disorder prediction 1 49 - -
Vian3g02042 609 SUPERFAMILY FYVE/PHD zinc finger 526 595 IPR011011 -
Vian3g02042 609 SMART PHD_3 539 591 IPR001965 -
Vian3g02042 609 SUPERFAMILY BRCT domain 293 377 IPR036420 -
Vian3g02042 609 MobiDBLite consensus disorder prediction 63 181 - -
Vian3g02042 609 MobiDBLite consensus disorder prediction 207 237 - -
Vian3g02042 609 MobiDBLite consensus disorder prediction 120 139 - -
Vian3g02042 609 ProSiteProfiles Zinc finger PHD-type profile. 537 593 IPR019787 -
Vian3g02042 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 524 608 IPR013083 -
Vian3g02042 609 MobiDBLite consensus disorder prediction 90 113 - -
Vian3g02042 609 Gene3D BRCT domain 402 500 IPR036420 -
Vian3g02042 609 Pfam PHD-finger 540 591 IPR019787 -
Vian3g02042 609 Pfam BRCA1 C Terminus (BRCT) domain 294 359 IPR001357 -
Vian3g02042 609 SMART BRCT_7 402 489 IPR001357 -
Vian3g02042 609 SMART BRCT_7 282 364 IPR001357 -
Vian3g02042 609 Gene3D BRCT domain 283 401 IPR036420 -
Vian3g02042 609 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 5 605 IPR044254 -
Vian3g02042 609 MobiDBLite consensus disorder prediction 9 43 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02042 244 517 Core DNA Replication Machinery Family AT4G02110 59.854 2.23e-115 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian3g02042 BRCT 4.9e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02042 K10728 - gmx:100799144 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02042 3 25934278 25936479 Vian3g02042 3 25934278 25936479 ECH