Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02037 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTAGGGTTGAAGAAAGGGAGGTGGACATCAGAGGAAGATGAGATCTTGGCCAAATACATTCAGGCCAATGGAGAAGGTTCTTGGAGGTCATTGCCTAAGAATGCAGGATTATTGAGGTGTGGCAAGAGTTGCAGACTCAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGAAACATTTCTGCTCAAGAGGAGAACACCATCGTCAAGTTGCACGCTTCTTTGGGTAACAGATGGTCTATGATAGCAAGTCATTTGCCAGGAAGAACAGACAACGAGATTAAGAATTACTGGAATTCTCACCTGAGCAGGAAAATTTACAGTTTCCCAAAGATGGAGAACCAACAAGGTGATACACCTAAAGTGGTGTGTGTTCCTCCGAAGAGAAAAGGTGGCAGAACAAGCCGTTGGGCAATGAAGAAGAACAAAAACTACATCGTAAATGCGGACAGAAGCAAACAGAGTTTGAGTGAAGAAGATAATACTGTTAGCATAGTTCCAAAGGCAGGCAGTTCGTGGACAGAGGGTAGAAGGGAAACAAAGGTAGATGAAAAGAGTGAAAGGGAGAAAAGTAGCGATGAGGAGATCTTAAAAGTGTGTGAAATTGAGGGCATTGATGAGGGGATGAGTGAGATGTTGGGAAGTTGCTTGGCAGAAACATGTGGGGTTTGGGACATAAATGAGGAGAGAGAGAGTAATGATATGGAAATGGTGGCTAGTGGTGATGCGTGTCTCAACAAAACATCGTCGTGTGATAGTAGCGTCAACGGTTATTCGTCTTCTTCTTCCGTGGCCCAGGGCTTGGATCAACACTGGGATTGGGAGAGCGTGATAGAGTTCAATAACATTGTTGAGTCCCAACTCGCTTCTGACCATTTTAATCACAAAGATGAACTGCTCACGTGGCTGTGGGAGGACGACAATTGGGTGGGAGAGACAGATTTAAAGATACAAGACAACGTTGTTGATTGGCTTCTCTCTTGA 1014 0.4428 MGRAPCCEKVGLKKGRWTSEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAQEENTIVKLHASLGNRWSMIASHLPGRTDNEIKNYWNSHLSRKIYSFPKMENQQGDTPKVVCVPPKRKGGRTSRWAMKKNKNYIVNADRSKQSLSEEDNTVSIVPKAGSSWTEGRRETKVDEKSEREKSSDEEILKVCEIEGIDEGMSEMLGSCLAETCGVWDINEERESNDMEMVASGDACLNKTSSCDSSVNGYSSSSSVAQGLDQHWDWESVIEFNNIVESQLASDHFNHKDELLTWLWEDDNWVGETDLKIQDNVVDWLLS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02037 337 SMART sant 66 114 IPR001005 -
Vian3g02037 337 SMART sant 13 63 IPR001005 -
Vian3g02037 337 FunFam Myb transcription factor 71 116 - -
Vian3g02037 337 CDD SANT 16 61 IPR001005 -
Vian3g02037 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian3g02037 337 MobiDBLite consensus disorder prediction 177 200 - -
Vian3g02037 337 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 231 - -
Vian3g02037 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian3g02037 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian3g02037 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian3g02037 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vian3g02037 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian3g02037 337 MobiDBLite consensus disorder prediction 184 200 - -
Vian3g02037 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian3g02037 337 CDD SANT 71 112 IPR001005 -
Vian3g02037 337 Gene3D - 11 67 - -
Vian3g02037 337 FunFam Myb transcription factor 11 67 - -
Vian3g02037 337 Gene3D - 70 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02037 Vian-Chr3 25824449 25829190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02037 1 150 MYB Transcription Factor Family AT2G47460 69.811 7.95e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian3g02037 Myb_DNA-binding 5.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02037 K09422 - gmx:100793350 413.69