Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02025 ATGACAAAAGCCAATGCGAAGAACAAATCCGCCTTCGCGCTCCACCCTCCTTACTTCCAGATGATTGCCGACGCAATAACGTCGTTGAAGGAACGCACGGGTTCGAGTCAGCCTGCGATAGCCAAGTTTGTCGAGGACAAGCACAGCAAAGGGCTTCCTCCCAACTTCCGGAAACTTCTGTCCGTTCAGTTGAAAAGTTTGGTCAAATTGGAGAAGCTCTACAAGGTCAAGAACTCCTACAAACTATCTTCTCCACATACTGAGAAACCAAAAACCGCTCCGAAAGAGAAGAAAGTGACGGAGAAGACGAAGAGGCTGAGTCAGGTGAAGACGCCCGAAACTCTGAAAAAGAAGAAAGCCCCCAGCACGAAGAAATATGTGGCGGCGGCGGCAGCCTCTGGAGGAGGTAAAGTGAAACGTTTGAGTCAGGTGAAGACTCCGGAGGCCATGAAGAAGAAGCCCAATATAACACCTGCCAAACGCAAGGGCACTCCCAAACCCTCCAGGGTCAACAAGAAAGCTAGGAAATGA 531 0.5009 MTKANAKNKSAFALHPPYFQMIADAITSLKERTGSSQPAIAKFVEDKHSKGLPPNFRKLLSVQLKSLVKLEKLYKVKNSYKLSSPHTEKPKTAPKEKKVTEKTKRLSQVKTPETLKKKKAPSTKKYVAAAAASGGGKVKRLSQVKTPEAMKKKPNITPAKRKGTPKPSRVNKKARK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02025 176 PANTHER HISTONE H1 6 168 - -
Vian3g02025 176 Gene3D - 11 107 IPR036388 -
Vian3g02025 176 MobiDBLite consensus disorder prediction 79 120 - -
Vian3g02025 176 CDD H15 15 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian3g02025 176 SUPERFAMILY "Winged helix" DNA-binding domain 15 96 IPR036390 -
Vian3g02025 176 SMART h15plus2 12 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian3g02025 176 MobiDBLite consensus disorder prediction 79 176 - -
Vian3g02025 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 14 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian3g02025 176 Pfam linker histone H1 and H5 family 15 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02025 Vian-Chr3 25506191 25506788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02025 16 85 Single Myb Histone (SMH) Gene Family AT1G72740 38.571 6.75e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02025 K11275 - gmx:100306187 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02025 3 25506191 25506788 Vian3g02025 3 25506191 25506788 ECH