Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02014 ATGTGTGGCGGTGCCATCATCGCTGACTTCATACCCCGCCGTGACCGTTCTCTCGCCGCCTCCGACCTCTGGCCAAACTCCTTCGGAAAGGACGATGATTTCGGCTTCGGTTACTCCCAAATCGCTAACCAACAACCCTCCACTGTCAAAACGGCCCAAGCTCCCAAAGTTAGCGAGAAAGTTGACACTAAGCCAGTGAAAAGGCAGAGGAAGAATCTCTACAGAGGGATTCGGCAGCGCCCTTGGGGCAAATGGGCTGCGGAGATTCGCGATCCTAGAAAAGGGGTTCGTGTCTGGCTGGGTACCTTCAACACTGCGGAAGAAGCTGCAAGGGCCTATGATCGTGAAGCTCGAAAAATCCGCGGGAAAAAAGCTAAGGTGAATTTCCCTAACGAGGACGATGAATATTCCATTCAAGCTCGTAATCCGATTCCACCCCTTCCTTTCGCAACCCAAAAACCAACCCCGTATCAGCAACAGTACCGTTGTGATCTCAATAATGCCCCTACAAATCTCAACTTGGAGTTTGGTTACGACCTGAACCACACTGGAGCATTTTCATCCCACGTGGACACTGTCAACGCTGACTCGGTTGTCGCTTCCGGCGACGAAAATTCAGGGTTAGCGTCCGGTTCAGAGGGCGCTCATTCGACAAACGAGTTCATGGGGTCTGGTGAGAAAGGGAACGGTTATTTCAACGGCACGGCGATTGAGAAGGAGAAAGAGATAGAGGTGATTGAAGCTGAAGAGGAAAAGAACAAACTGCAGGAGCTTTCTGAGGAACTGATGGCTTATGAGAATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAATCTATGCCACCGAATAATGTTCAGGAAAGTGTTGTCGGGGATCTCTGGAGTTTCGATTGA 900 0.4989 MCGGAIIADFIPRRDRSLAASDLWPNSFGKDDDFGFGYSQIANQQPSTVKTAQAPKVSEKVDTKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARNPIPPLPFATQKPTPYQQQYRCDLNNAPTNLNLEFGYDLNHTGAFSSHVDTVNADSVVASGDENSGLASGSEGAHSTNEFMGSGEKGNGYFNGTAIEKEKEIEVIEAEEEKNKLQELSEELMAYENYMKFYQIPYYDGQSMPPNNVQESVVGDLWSFD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02014 299 MobiDBLite consensus disorder prediction 204 224 - -
Vian3g02014 299 Coils Coil 238 268 - -
Vian3g02014 299 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Vian3g02014 299 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Vian3g02014 299 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Vian3g02014 299 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Vian3g02014 299 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Vian3g02014 299 PANTHER DNA-BINDING DOMAIN 55 226 IPR044808 GO:0003700|GO:0009873
Vian3g02014 299 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Vian3g02014 299 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Vian3g02014 299 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vian3g02014 299 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vian3g02014 299 MobiDBLite consensus disorder prediction 204 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02014 Vian-Chr3 25180351 25181335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02014 1 131 AP2-EREBP Transcription Factor Family AT3G16770 54.412 6.39e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian3g02014 AP2 8.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02014 K09286 - gmx:100780763 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02014 3 25180351 25181335 Vian3g02014 3 25180351 25181335 ECH