Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02009 ATGAACAACTTCACACTAGCATCCATTTTGACTGTCCTTTCTGCATTACTCTTCTTTGCAACTCATTTGACTAACACCCCAACAAGAGCCACACAGAAACACCTCCATTTCCAAAAGCACATACAAGTAGCTCAATCCACGTGCCAAGGAACACTCTACCCCGAACTATGTGTCTCAACCCTTGCCACATTCCCAGATCTTACCTCAAAATCTCTCCCACAACTCATTTCTTCTGTGGTCAACCATACCATCTACGAGGTAAAATCATCCTTCTACAACTGCAGCAGCCTCAAAAAGAAGATCAGAAACCTCAACCCACTTGATCAGAGAGCCCTCGATGACTGTCTCAAACTGTTCGAAGACACAAACCTGGAACTCAAAGCCACCATCGATGATCTCTCCAAGAGCACCATTGGGTCCAAGCGCCACCATGACTTGCAGACTCTGCTCAGCGGAGCAATGACCAACTTATACACGTGCCTCGACGGCTTTGCTTACAGCAAGGGGCGCGTCAGAGACAGAATCGAGAAGAAGTTGCTTGAGATATCGCATCACATGAGCAACTCCTTGGCCATGCTGAAGAAAGTTCCTGAAGTGAAGAAAACAACTTCGAAATCTGAGGTTTTCCCCGAATATGGAAAGATGAAAAAGGGTTTCCCCTCGTGGGTGTCCCCCAATGACAGAAAGCTTCTCCAAGCGTCTGTGGATGAAACCAAGTTCGATCTCGTCGTTGCCAAAGATGGCACTGGCAATTTCACCACCATAGGGGAAGCACTTGCTGTGGCTCCCAACTCCAGCACAACCAGGTTTGTGATACACATAAAGGAGGGGGCATATTTCGAGAATGTGGAAGTGATCAGGAAGCAGACGAATCTGATGTTTGTTGGAGACGGCATTGGGAAGACAGTAGTGAAAGGTAGTAGGAACGTTGTGGACGGGTGGACAACTTTTCAATCAGCTACTGTTGACACCGAGTGGTTGGGTTTGTCAAGTCAGGGTGGTGCAGTTTACCGCGTGCATTGA 1023 0.4761 MNNFTLASILTVLSALLFFATHLTNTPTRATQKHLHFQKHIQVAQSTCQGTLYPELCVSTLATFPDLTSKSLPQLISSVVNHTIYEVKSSFYNCSSLKKKIRNLNPLDQRALDDCLKLFEDTNLELKATIDDLSKSTIGSKRHHDLQTLLSGAMTNLYTCLDGFAYSKGRVRDRIEKKLLEISHHMSNSLAMLKKVPEVKKTTSKSEVFPEYGKMKKGFPSWVSPNDRKLLQASVDETKFDLVVAKDGTGNFTTIGEALAVAPNSSTTRFVIHIKEGAYFENVEVIRKQTNLMFVGDGIGKTVVKGSRNVVDGWTTFQSATVDTEWLGLSSQGGAVYRVH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02009 340 PANTHER PECTINESTERASE 16 324 - -
Vian3g02009 340 NCBIfam pectinesterase inhibitor domain 14 195 IPR006501 GO:0004857
Vian3g02009 340 SMART PMEI_2 39 192 IPR006501 GO:0004857
Vian3g02009 340 Pfam Pectinesterase 241 324 IPR000070 GO:0030599|GO:0042545
Vian3g02009 340 CDD PMEI-like_3 46 197 - -
Vian3g02009 340 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 197 IPR035513 -
Vian3g02009 340 Gene3D - 235 333 IPR012334 -
Vian3g02009 340 SUPERFAMILY Pectin lyase-like 239 323 IPR011050 -
Vian3g02009 340 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 196 IPR035513 -
Vian3g02009 340 FunFam Pectinesterase 41 198 - -
Vian3g02009 340 Pfam Plant invertase/pectin methylesterase inhibitor 45 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02009 Vian-Chr3 25036267 25037893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02009 68 322 Carbohydrate Esterase AT4G02320 46.642 1.47e-69 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02009 K01051 - gmx:100802881 556.214