Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02008 ATGGCTCTTAACATTTCTGTCCTCATATTCTCGCTTTGCTATATACTTTCCTTCTCTCTCTTGGCATCATTCTCCATCGCAGATATCAGTTCATCCTCCATTGTTCCACCTGAAACCATTTGCGGGTCCACCGTAGACCCTACTTACTGTAGCAAAACCGTGCTTGCCAATCAAAAGGGCAACGTCTTCGACTATGGTCGCATTTCTTTTCAAAAGTCCTTGTCCCAGACACGCAAGTTCTTTAACTTGGTGGGTTCGTATCTTCAAGGTAGCTTGTCGTTCTCTCAATACACTATTGGTGCTCTTGAAGACTGTCGATACCTTGCTGAGCAAAACTTTGAATACTTATCAAACATTTATGCCACTACTAGCCAAGCTAGCGCTGTTCTTCCGACTTCTCAAGCTGAAGATTTTGAAAACTATCTCAGTGCCGTTTTGATTAACCAACAAACATGCTTAGAAGGTCTTCAGAGTACAACTTCAGATGCAAGAGTGAAGAATGACCTGTTATCATCTTTCTCTGATGATTTGAAGCTTTACAGCGTTACATTGGCTTTGTTTTTAAAGGGGTGGGTGCCTGAGAAGAAAATCATCAGATCGTGGCCCCAAAATGGAAGACATTTGAATTTAAAAAATGGTCGCTTGCCATTGGTCATGTCAGATCGAGTACGTGCTATTTATGACTCTGCTAGACACCATGGGAGGAAACTACTAACCACTGATAATGGCGGAAGTGTTGTTATTAGTGACATCGTGGTTGTTAGTCAAGATGGAAGCGGAAACTTTACCACTATCAACGATGCAATTGCTGCTGCACCAAACAACACAGTTGCTGGTGATGGGTACTTCCTTGTTTTCATCACTGAGGGAGTGTACCAGGAATATGTATCCATTGCCAAAAGCAAGACGTATTTAATGCTTGTTGGAGATGGGATCAATCGGACAATCATCACGGGCAATCACAGTGTTGGAGATAATTTTACAACATTCAACTCAGCAACAGTAGTTTCCTTGCCTTTTCCTCTTCCAAATCCTAATTCTGAAAACCCAAGCTTCAGGAGTTCACTGACGTTGCGAATGCTTTTTGAGGAGCTCTCTGATGGCGCTTTTGAGAAGCTTGTGATTCGCATAACTTTTGTGTCTCGCCATTTCCATCTCCCAACCTTCGTGTCTCACTGTTTCCATCTTGCGATGTTCACAACCTTCATCAATTATCCATTTGAGAAAGGACCTTTGAGCCGTCGTTTTCGTGGTGAACATGCTCTCAAAAGATATCCAACAGGGGAGGAACGTTGTATTGCTTGCAAACTTTGTGAAGCTGTAAGGCTGTGA 1332 0.4264 MALNISVLIFSLCYILSFSLLASFSIADISSSSIVPPETICGSTVDPTYCSKTVLANQKGNVFDYGRISFQKSLSQTRKFFNLVGSYLQGSLSFSQYTIGALEDCRYLAEQNFEYLSNIYATTSQASAVLPTSQAEDFENYLSAVLINQQTCLEGLQSTTSDARVKNDLLSSFSDDLKLYSVTLALFLKGWVPEKKIIRSWPQNGRHLNLKNGRLPLVMSDRVRAIYDSARHHGRKLLTTDNGGSVVISDIVVVSQDGSGNFTTINDAIAAAPNNTVAGDGYFLVFITEGVYQEYVSIAKSKTYLMLVGDGINRTIITGNHSVGDNFTTFNSATVVSLPFPLPNPNSENPSFRSSLTLRMLFEELSDGAFEKLVIRITFVSRHFHLPTFVSHCFHLAMFTTFINYPFEKGPLSRRFRGEHALKRYPTGEERCIACKLCEAVRL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02008 443 PANTHER PECTINESTERASE 24 335 - -
Vian3g02008 443 Gene3D - 405 441 - -
Vian3g02008 443 CDD PMEI-like_3 39 191 - -
Vian3g02008 443 Pfam Plant invertase/pectin methylesterase inhibitor 38 186 IPR006501 GO:0004857
Vian3g02008 443 Pfam Pectinesterase 252 336 IPR000070 GO:0030599|GO:0042545
Vian3g02008 443 Gene3D - 246 353 IPR012334 -
Vian3g02008 443 SUPERFAMILY Pectin lyase-like 247 336 IPR011050 -
Vian3g02008 443 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 187 IPR035513 -
Vian3g02008 443 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 189 IPR035513 -
Vian3g02008 443 SMART PMEI_2 32 186 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02008 Vian-Chr3 25009351 25013110 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02008 19 355 Carbohydrate Esterase AT4G02330 42.897 4.66e-83 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02008 K01051 - gmx:100813051 415.616