Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02007 ATGGCAAATAAATTACGTAATTCTCTCCCCAAAACATCACCATTTCTCAACCTTTTCATACCCTTGTTATTCATCTCCCTGGTTTTCGCAGAAACCCCACCAACCACTTCTGTATCTCCCGTAACCATATGCAAATCCACCCCAGACCCATCTTATTGCAGTTCCGTCCTCCCTCCCCGAAACGCCAACGTTTACGACTATGGCCGTTTCTCAGTGAAAAAGTCTCTTTCACAAGCAACCAAGTTCTTGAACTTGGTTAACAGATACCTTCAACGCCGCTCTTCTCTTTCAACCTCCGCAATCCACGCGCTCCAAGATTGCCAAACCCTCGCCGAACTCAACGTCGACTTTCTCTCCAGTTCCTTCCAAACAGTCAACCGCACAACCACGCTCCTTCCCACTTCGCGAGCTGACGACATCCAAACCCTTCTAAGCGCCATTCTAACCAACCAACAAACCTGCTTGGAAGGCCTCCAAGCCACAGCCTCCGCTTGGCGTGTCAGCAACGGACTCTTCCTACCGCTTTCCAACGACACCAAGCTCTACACCGTCTCTCTCGCGCTCTTCACCAAGGGCTGGGTCCCCACCAACGCTAACGTCACCGCGTTTCAACCACCCGCCAAACACCGCGCCTTTCGAAACGGTCGTTTACCGCTCAAGATGTCCAGCAGAACACGCGCGATCTACAACTCCGTGAGTCGGAGAAAGCTCCTTCAGGGGAATGTGGGTGACGAGGTGAAAGTGAAGGACATCGTCACTGTCAGCAAAGATGGTAGCGGGAACTTCACCACCTTGAACGACGCCATTGCGGCGGCGCCCAACAAGTCTTCCTCTACATCGGGCGGTGGTTGGAGCAGGATTTGTGGGTGTTAA 873 0.5246 MANKLRNSLPKTSPFLNLFIPLLFISLVFAETPPTTSVSPVTICKSTPDPSYCSSVLPPRNANVYDYGRFSVKKSLSQATKFLNLVNRYLQRRSSLSTSAIHALQDCQTLAELNVDFLSSSFQTVNRTTTLLPTSRADDIQTLLSAILTNQQTCLEGLQATASAWRVSNGLFLPLSNDTKLYTVSLALFTKGWVPTNANVTAFQPPAKHRAFRNGRLPLKMSSRTRAIYNSVSRRKLLQGNVGDEVKVKDIVTVSKDGSGNFTTLNDAIAAAPNKSSSTSGGGWSRICGC 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02007 290 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 191 IPR035513 -
Vian3g02007 290 FunFam Pectinesterase 41 191 - -
Vian3g02007 290 SUPERFAMILY Pectin lyase-like 249 276 IPR011050 -
Vian3g02007 290 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 191 IPR035513 -
Vian3g02007 290 SMART PMEI_2 35 188 IPR006501 GO:0004857
Vian3g02007 290 CDD PMEI-like_3 42 193 - -
Vian3g02007 290 PANTHER PECTINESTERASE 30 274 - -
Vian3g02007 290 Pfam Plant invertase/pectin methylesterase inhibitor 42 188 IPR006501 GO:0004857
Vian3g02007 290 Gene3D - 218 282 IPR012334 -
Vian3g02007 290 NCBIfam pectinesterase inhibitor domain 18 162 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02007 Vian-Chr3 24954717 24956787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02007 16 281 Carbohydrate Esterase AT4G02330 51.579 1.31e-82 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02007 K01051 - gmx:100790729 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02007 3 24954717 24956787 Vian3g02007 3 24954717 24956787 ECH