Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02006 ATGTATACATACATGCATGTAAAAGAAACCCCATCAACCACTTCTGCATCTCCCATAACCATATGCAAATCCACCCCAGACCCATCTTATTGCAGTTCCGTTCTCCCTCCCCAAAACGCCAACGTTTACGACTATGCCCGATTCTCACTGAGAGAGTCTCTTTCACAAGGAACCAAGTTCTTGAACTTGGTTAACAGACACCTCCAACGCCGCTCTTCTCTTTCAACCTCCGCAATCCACGCGCTCCAAGATTGCCAAACCCTCGCCGAACTCAACGTCGACTTTCTCTCCAGTTCGTTCCAAACATTGAACCACACAACCACGCTCCTTCCCACTTCACGAGCTGACGACATCCAAACCCTTCTAAGCGCCATTGTAACCAACCAACAAACCTGCTTGGAAAGCCTCCAAGTCACAGCCTCCGCTTGGCGTGTCAGCAGCGGACTCTTCCTACCACTTTCCAACGACACCAAGCTCTACACCGTCTCTCTCGCGCTCTTCACCAAGGGCTGGGTCCCAACCAACGCTAACGTTACCGCGTTTCACCCACCCTCCAAACACCACGCCTCTCGAAACGGTCGTCTACCGCTAAAGATATCCGGCAGAACGCGCGCGATCTACGACTCCGTGAGTCGGAGAAAGCTCCTTCAGGGGAAGGTGGGTGACGAGGTGAAGGTGAAGGACGTCGTCACTGTCAGCAAAGATGGTAGCGGGAACTTCACCACCTTGCACGACGCCATTACGGCGGCTCCCAACAAGTCTTCCTCTACCTCAGGGTACTTCCTCATCTACGTCACTGCGGGTGTTTACGAGGAAAATGTGTCAATTGATAAGGAAAAGACGTACTTGATGATAGTTGGAGATGGCATCAACAAGACAATTATTACAGGGAATCGCAGTGTTGTTGATGGTTGGACTACCTTTAATTCCGCAACTTTTGGTACGTACTAG 951 0.5089 MYTYMHVKETPSTTSASPITICKSTPDPSYCSSVLPPQNANVYDYARFSLRESLSQGTKFLNLVNRHLQRRSSLSTSAIHALQDCQTLAELNVDFLSSSFQTLNHTTTLLPTSRADDIQTLLSAIVTNQQTCLESLQVTASAWRVSSGLFLPLSNDTKLYTVSLALFTKGWVPTNANVTAFHPPSKHHASRNGRLPLKISGRTRAIYDSVSRRKLLQGKVGDEVKVKDVVTVSKDGSGNFTTLHDAITAAPNKSSSTSGYFLIYVTAGVYEENVSIDKEKTYLMIVGDGINKTIITGNRSVVDGWTTFNSATFGTY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02006 316 SUPERFAMILY Pectin lyase-like 227 314 IPR011050 -
Vian3g02006 316 Pfam Pectinesterase 230 314 IPR000070 GO:0030599|GO:0042545
Vian3g02006 316 Gene3D - 223 316 IPR012334 -
Vian3g02006 316 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 20 169 IPR035513 -
Vian3g02006 316 SMART PMEI_2 13 166 IPR006501 GO:0004857
Vian3g02006 316 PANTHER PECTINESTERASE 19 314 - -
Vian3g02006 316 FunFam Pectinesterase 19 169 - -
Vian3g02006 316 CDD PMEI-like_3 20 171 - -
Vian3g02006 316 Gene3D Invertase/pectin methylesterase inhibitor family protein 19 169 IPR035513 -
Vian3g02006 316 Pfam Plant invertase/pectin methylesterase inhibitor 20 165 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02006 Vian-Chr3 24933817 24934974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g02006 11 314 Carbohydrate Esterase AT4G02330 54.062 5.79e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02006 K01051 - gmx:100790729 479.944