Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01996 ATGTCTCTCCGAATAAAGGCAGTGGTAGATAAATTTGTCCAGGAGTTGCAGGAAGCGTTGGATGCTGATATTCAGGATAGGATCATGAAGGATAGAGAGATGCAAAGTTACATTGAAGAACGTGAACGTGAGGTTGCGGAACGTGAGGCTGCTTGGAAGGCTGATCTTTCTCGTCGAGAGGCTGAGATTGCCCGACAAGAAGCAAGGCTGAAGATGGAGAGAGACAATCTGGAGAAAGAGAAAAGTGTGTTGATGGGAACTGCGTCAAATCAAGATAACCAAGATGGAGCTCTTGAAATTACTGTCCTCTTAATGAGCAGATCTCTGGCAGTGCAGTACCTAAAAAAAGGTGCCCACATTCAAAGGTTTTGTGAGCTTTTGGAGGATTTATGCAGCAAATCTGAACTAAATAGTGATGACAAAGGCTACTTATGTATTTTAAGATGTTCTAGAATAGTCGGCTGCAGCACAGAAAAGAGAAACCAAACCAGCCATCCCAATCACCTGTGTCCAATTTCGCGTTCCAGCAGCAGCAGCGGCGCCAGCAACAGCACCACCAATCAAACCGTTGACCTGTCGGGGAAATTTAAAAAGAAAAGGAGGACATTTAAAACAAGGAGGAATAAACGATGTTACCGCTCCGACACGAATAATAGCCTCGACGGCGAGGGAGGAGCACGGAGCGACGCCGTCCAAGTTTTCTTCCATTTTCTCTCCGTCGCCACGGAGAGAGACTGTGCGTGTGGCCGAGGGAGAGAGAGAGAAGCGAAAATGAGCGGAGCAAAGGGGAAGAAGAAGGGAGCTAGCTTCGTGATCGATTGCGCGAAGCCTGTTGAGGACAAGATTATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTCGGCGGCAAGGCCGGTGCACTCGGCGATTCCGTTACTGTCACACGGGAGAAGAGCAAGATCACCGTTACCTCTGACAGCAACTTCTCTAAAAGGTATCTGAAATATTTGACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGGGTGATTGCATCCAACAAGGACAGGAATGTCTATGAGTTGAGATATTTCAACATTGCTGAGAATGAGGGTGAAGAGGAAGACTGA 1131 0.4686 MSLRIKAVVDKFVQELQEALDADIQDRIMKDREMQSYIEEREREVAEREAAWKADLSRREAEIARQEARLKMERDNLEKEKSVLMGTASNQDNQDGALEITVLLMSRSLAVQYLKKGAHIQRFCELLEDLCSKSELNSDDKGYLCILRCSRIVGCSTEKRNQTSHPNHLCPISRSSSSSGASNSTTNQTVDLSGKFKKKRRTFKTRRNKRCYRSDTNNSLDGEGGARSDAVQVFFHFLSVATERDCACGRGREREAKMSGAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01996 376 MobiDBLite consensus disorder prediction 159 192 - -
Vian3g01996 376 MobiDBLite consensus disorder prediction 159 208 - -
Vian3g01996 376 Coils Coil 56 83 - -
Vian3g01996 376 Gene3D - 257 376 IPR038526 -
Vian3g01996 376 PANTHER 60S RIBOSOMAL PROTEIN L22 254 376 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vian3g01996 376 FunFam 60S ribosomal protein L22-2 257 376 - -
Vian3g01996 376 Pfam Ribosomal L22e protein family 266 374 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01996 Vian-Chr3 24631947 24651782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01996 261 376 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 90.517 4.61e-62 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01996 K02891 - pop:7455994 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01996 3 24631947 24651782 Vian3g01996 3 24631947 24651782 ECH