Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01995 ATGGTCGAAACCAGACGCAGCAGCTCTTCCTCTTCCAAGCGCTCTCTCTCTTCCTCCTCTCCCCCCAACAACACCAAAAGATCCAAGGTTTCCGAGGATTCCTCATCAACAACCGTGCCCTCCGTAGCTCCGGTCAACGAATCTGGACCCGCCAATGAATCTGCCGAACCGGAGCTGCGGCCCTCTGATCTACCCGATACGGCGTCGTTGAAGGCCGTCGATGGGTGTGATGCGATTTCGCCTGATAAATCTCCGTCTACACCTGTTGAGGGGGAGGCTTTGGTGTCCCCTCAGTGTCTAGGTGAAACAGCGGAGAAATCGAAGGGGGCTGGGGCGGCGGCGGCGGCGGCGACTGTGTCCCCGGTTGGTCGGTCGAAGAAACGCCCTACGAAATTGAACCCCAAGGTTGCTTGGGCAAAGCTCCTTTCACAGTGTTCTCAGAATCCTCATGTGCCCATAAGTGATCTTAGCTTCACTGTTGGTCAAGGTCGTAATTGTAATTTATGGCTTAAAGATCCCACTGTTGGTAATATGTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGCTCGTCTGTTGCATTACTTGAAATCACAGGGGGCAAAGGTTCTATTCAAGTTAATGGCAGAACTCATAGAAAGAATACCCGATTGATTTTAAGTGGAGGAGATGAGGTGGTCTTTGGTTCATCTGGCAAGCATGCTTATATCTTTCAGCAGCTCACAAATAACAATATTAGTCATGCTGGTATACCTTCTTCCATGAGTATTTTAGAAGCCCAGAGTGCTCCCATAAATGGAGCGCAAGTTGAAGCTAGATCTGGTGATCCTTCTGCCGTTGCTGGAGCATCAATATTGGCCTCTTTATCTAATCTTCATAAAGACTTATCTCTCCTTTCATCTCCTGCTAAAAATGGAAAGAATGTGCAACAGAACACTGACATTTCATCACTACCTTCTGGCAATGGGGATGATGTGCCTGACAGTGAAATGAAGGATGCCACCAGTAAAGATGTACCATCATCTGGAGTTTTCTCTGCTGACAAAACTGTTCTAGCATCCTCTAACACTGTTAATGAAAATCCCAGCATTGACGCAACTGAAGTTGACACAACTGTGGATGCTGATGTTGGGAAGGTAGCTGCTGCTACATATGAATTTAGGCCATTACTGCGCATGCTTGCTGGCTCATGTCCTGAACTTGATTTAAGTTGTGGCATTACTAAGATATTGGAAGAGCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACCCCAACAATATTGGCTTCAACCAGGCGGCAAGCATTCAAGGACAGTTTAGAACAGAGAATTCTCAAATCTGAGGATATTGATGTCTCTTTTGAAACTTTCCCCTATTATCTGAGTGATACAACAAAGAGTGTTTTGATCGCTTCTACATTTATTCATTTGAAGTGCAATGGCTTTGCAAAATATGCTTCTGACCTCCCATCCGTTTCTCCACGAATATTGCTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTAGCAAAGCATTTTGGTGCCAGGCTACTGATTGTGGATTCTCTTTCATTGCCCGGTGGAGCTCCTGCAAAAGAAGTAGATTCTGCTAAAGAAAGTTCCAGACCGGAAAGGCCATCTGTGTTTGCCAAGAGAAGTTCCCAGACTGCCACATTACATCACAAGAAACCAGCGTCCAGTGTTGACGCTGAAATTATAGGTGGATCCACGCTAAGTTCTCAAGCTATGCTGAAGCAAGAGGTTTCCACTGCATCGTCAAAAGGGACTACTCTTAAAGAGGGTGATAGAGTAAAATTTGTTGGAAATTTTCCTTCTGCCGTCTCAGCACTACCAAATTATCCTTCAAGGGGACCAAGCTATGGCTCTCGGGGTAAAGTTATGCTTGCTTTTGAAGATAATGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGTGAAGATGATAGAGGGTTCTTTTGTTCGGCAAATCATTTACTAAGGGTAGATGGCTCCGGAGGGGATGATACGGACAAAGTTGCAATAAATGATATCTTCGAGGTTACCTCTAATCAGAGTAAAAGTGGTCCATTAGTGTTGTTCATTAAAGATATAGAGAAGACAATGGTTGGGAACTATGATGTTTTGAAAAATAAATTCGAAAGCTTGCCACCAAATGTTGTCGTTATTGGCTCTCATACTATGCTTGACAGTAGAAAGGAGAAGACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCACTACTCGATCTTGCCTTCCCGGATAACTTTAGTAGACTACATGATCGGAGCAAAGAAACCCCTAAAGTAATGAAGCAACTTGGGCGACTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGAGTTTACTTTCCGATTGGAAGCAACAATTAGAACGTGACATTGAAACTATGAAAGCTCAGTCCAATATTGTCAGTGTTCGCACAGTTCTCAACAGGATTGGACTGGATTGCCCTGACCTTGAGACTCTTTGCATCAAAGATCAAACCCTAGCTACTGAAAGTGTGGAGAAGATCGTTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTGAAGCTTCTACCAAAGATTCTAAGCTTGTGATATCTGCAGAAAGCATTAATTATGGGCTTAACATTCTACATGGCATTCAAAATGAGAACAAAAGCTTGAAAAAATCACTCAAGGATGTGGTTACTGAGAATGAGTTTGAGAAGAAGCTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTTATGCTTCCTCTTCAGAGGCCTGAATTATTTTGCAAAGGACAGCTCACAAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGAACAGGAAAAACAATGCTTGCAAAGGCTGTAGCTACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTAAAAGCAGTTTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGCTAGGAAGACGTGAAAACCCCAGTGAGCACGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTTAATTGGGATGGTTTGCGTACTAAAGATAAAGAGCGGGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGCGGCTTCCAAGACGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGGAAAAATTCTCAGAGTCATTTTAGCGAAAGAAGATTTGGCACCTGATGTTGATTTTGAAGCAATGGCTAATATGACTGATGGATATTCTGGGAGTGATCTAAAGAACCTTTGTGTCACAGCAGCTCACTGCCCAATACGAGAGATCTTAGAGAAAGAAAAGAAGGAGAAAAGCTTAGCAGTATCTGAGAACAAACCTTTACCTGGATTGTGTGGCAGCTCCGACATTCGGCCTTTGAAGATTGATGATTTTAGATATGCACATGAGCAGGTGTGTGCGAGCGTGTCATCAGAATCAACAAATATGAATGAACTACTCCAATGGAATGATCTCTACGGAGAAGGAGGGTCAAGAAAAATGAGATCTTTGAGCTATTTCATGTAA 3774 0.433 MVETRRSSSSSSKRSLSSSSPPNNTKRSKVSEDSSSTTVPSVAPVNESGPANESAEPELRPSDLPDTASLKAVDGCDAISPDKSPSTPVEGEALVSPQCLGETAEKSKGAGAAAAAATVSPVGRSKKRPTKLNPKVAWAKLLSQCSQNPHVPISDLSFTVGQGRNCNLWLKDPTVGNMLCKLSHIERGGSSVALLEITGGKGSIQVNGRTHRKNTRLILSGGDEVVFGSSGKHAYIFQQLTNNNISHAGIPSSMSILEAQSAPINGAQVEARSGDPSAVAGASILASLSNLHKDLSLLSSPAKNGKNVQQNTDISSLPSGNGDDVPDSEMKDATSKDVPSSGVFSADKTVLASSNTVNENPSIDATEVDTTVDADVGKVAAATYEFRPLLRMLAGSCPELDLSCGITKILEERRELRELLKDVDTPTILASTRRQAFKDSLEQRILKSEDIDVSFETFPYYLSDTTKSVLIASTFIHLKCNGFAKYASDLPSVSPRILLSGPAGSEIYQETLCKALAKHFGARLLIVDSLSLPGGAPAKEVDSAKESSRPERPSVFAKRSSQTATLHHKKPASSVDAEIIGGSTLSSQAMLKQEVSTASSKGTTLKEGDRVKFVGNFPSAVSALPNYPSRGPSYGSRGKVMLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDTDKVAINDIFEVTSNQSKSGPLVLFIKDIEKTMVGNYDVLKNKFESLPPNVVVIGSHTMLDSRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLGRLFPNKVTIQLPQDESLLSDWKQQLERDIETMKAQSNIVSVRTVLNRIGLDCPDLETLCIKDQTLATESVEKIVGWAISYHFMHSSEASTKDSKLVISAESINYGLNILHGIQNENKSLKKSLKDVVTENEFEKKLLGDVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRGKILRVILAKEDLAPDVDFEAMANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKEKSLAVSENKPLPGLCGSSDIRPLKIDDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01995 1257 Gene3D - 1125 1219 - -
Vian3g01995 1257 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 435 1256 - -
Vian3g01995 1257 MobiDBLite consensus disorder prediction 300 322 - -
Vian3g01995 1257 Gene3D - 951 1231 IPR027417 -
Vian3g01995 1257 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 951 1126 - -
Vian3g01995 1257 MobiDBLite consensus disorder prediction 554 569 - -
Vian3g01995 1257 SUPERFAMILY SMAD/FHA domain 138 234 IPR008984 GO:0005515
Vian3g01995 1257 Gene3D - 137 247 - -
Vian3g01995 1257 MobiDBLite consensus disorder prediction 536 575 - -
Vian3g01995 1257 Pfam ATPase family associated with various cellular activities (AAA) 993 1122 IPR003959 GO:0005524|GO:0016887
Vian3g01995 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 952 1231 IPR027417 -
Vian3g01995 1257 CDD RecA-like_ATAD1 956 1122 - -
Vian3g01995 1257 ProSitePatterns AAA-protein family signature. 1096 1115 IPR003960 GO:0005524|GO:0016887
Vian3g01995 1257 MobiDBLite consensus disorder prediction 1 48 - -
Vian3g01995 1257 MobiDBLite consensus disorder prediction 300 342 - -
Vian3g01995 1257 MobiDBLite consensus disorder prediction 1 94 - -
Vian3g01995 1257 SMART AAA_5 989 1126 IPR003593 GO:0016887
Vian3g01995 1257 Pfam AAA+ lid domain 1146 1182 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01995 Vian-Chr3 24543575 24556002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01995 952 1196 Calmodulin-binding Proteins AT3G56690 38.492 1.84e-39 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01995 - - gmx:100801477 2185.22