Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01992 ATGACAATCCGCGCATTCAGAAAGCAGAAGCAGTTTTGCGGAGAAAACATTAAACGGGTGAATTCTAATTTGCGAATGGATTTCCACAACTTCAGTTCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCATAGTTTTTTGCTTCTCCGCCATGTTCATGATCATGTTACCCAGCAATATCTTAAAGCCAGAGAATGTTGGTTTGTCGCTCTCATATGGGTTATCCCTAAACGCCATGATGTTCTGGGCCATATACACTAGCTGTTCCATTGAAAACAAATTGGTATCTGTTGAGAGGATCAAACAGTTCACAAATATTCCATCCGAAGCAACATGGAGAAACAAGGATCGTGTGCCTCCTGCAAATTGGCCCGGTCAAGGCAATGTTGATATCAAAGATTTGCAGGTTAGATATCGTCCAAACACCCCTTTGGTTCTTAAAGGCATCACCTTAAGCATCAATGGAGGAGAAAAAGTTGGTGTTGTTGGTCGAACAGGAAGTGGAAAATCAACTTTGATTCAAGTTTTCTTCAGGCTGGTGGAACCAACAGGAGGAAAAATAATAATTGACGGCATTGACATATCTATCTTGGGACTTCATGATCTTAGATCACGGTTTGGTATAATCCCTCAAGAGCCTGTCCTTTTTGAAGGAACAGTTCGAACTAACATTGATCCAACTGGACAATATACAGACGAAGAGATATGGAAGAGTTTGGAACGCTGTCAGCTAAAAGAAGCAGTGGCTTCCAAGCCAGAGAAACTTGACTCTTCAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTTTGGGAAGGGTTATGCTTAAGCAAAGTAGGTTGTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTGATTCAAAAGATCATCCGAGAGGACTTTGCAGCACGTACCATCATCAGCATTGCTCATAGAATACCAACAGTAATGGACTGCGATAGAATTCTAGTTGTGGACGCAGGGAGGGCCAAAGAATTTGACTCACCAGCCAACTTGGTCCAAAGGCCATCACTCTTTGTTGCTTTAGTTCAGGAGTATGCCAATCGCTCAAATGGCCTATAA 1125 0.4276 MTIRAFRKQKQFCGENIKRVNSNLRMDFHNFSSNAWLGFRLELLGSIVFCFSAMFMIMLPSNILKPENVGLSLSYGLSLNAMMFWAIYTSCSIENKLVSVERIKQFTNIPSEATWRNKDRVPPANWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRTNIDPTGQYTDEEIWKSLERCQLKEAVASKPEKLDSSVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRILVVDAGRAKEFDSPANLVQRPSLFVALVQEYANRSNGL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01992 374 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 95 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian3g01992 374 FunFam ABC transporter C family member 3 115 366 - -
Vian3g01992 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 365 IPR027417 -
Vian3g01992 374 SMART AAA_5 158 342 IPR003593 GO:0016887
Vian3g01992 374 SUPERFAMILY ABC transporter transmembrane region 2 112 IPR036640 GO:0005524|GO:0016020
Vian3g01992 374 Gene3D ABC transporter type 1, transmembrane domain 1 113 IPR036640 GO:0005524|GO:0016020
Vian3g01992 374 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 368 - -
Vian3g01992 374 Gene3D - 114 365 IPR027417 -
Vian3g01992 374 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 132 366 IPR003439 GO:0005524
Vian3g01992 374 Pfam ABC transporter 149 297 IPR003439 GO:0005524
Vian3g01992 374 CDD ABCC_MRP_domain2 130 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01992 Vian-Chr3 24456682 24459286 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01992 130 356 Calmodulin-binding Proteins AT2G36910 30.870 1.94e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01992 - - vum:124839723 714.916