Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01990 ATGTCGTTTGCAGCTTCAACGTGGCTCACGTCCCTCTCGTGTTCATTGGATGCAACTCCAAATCTTCCTCACTGGCTGAGATTCATTTTCCTCTCTCCATGCCCTCAGAGAGCTCTTTTGTCTGGTGTTGACGTTCTGCTTCTGTTGACACTCTTTGTGTTTGCGCTTGTAAAGCTCTATTCTAGGCTCACTTCCAATGCCAACGCTGACTCACACCTTGATAAACCACTTATCAGAAACAACAGAGTTTCTGTCAGGACAACAGCATGGTTTAAGCTAACTCTAACTGCAACCACTCTTTTGACATTATTGTACGCGGTGGCTTGCATTCTAGTGTTTGTCAGTTCCACCAACGAGCCCTGGAAGCAAACTGATGGCTTGTTTTGGTTACTTCAGGCCATAACACAACTAATCCTTATAGTCTTGATCGTCCATGAGAAAAGATTTGAAGCTGTTACTCACCCTTTGTCTCTCAGAATATACTGGATTGCAAATTTCATTGTGGTTTCTCTGTTCACTGCTTCTGGGATCATACGTTTGGTCTCTGTAGGAGTGGAAGATGGGAAACACTTCAGCTTCATGGTTGATGATACGGTTTCTTTCATTTCTTTACCCTTGTCACTTTTTCTGCTCTTTGTTGCAGTTAAAGGGTTCACCGGGATTGTGTCTGGCGAAGAAACAGAACCCCTTATTGACGAGGAAACAAAACTACATGAGAAATCCAACGTTACTGGCTTTGCTTCAGCTTCTGCAATATCCAAGGCCTTTTGGATTTGGATAAACCCGTTGTTGAGCAAAGGGTACAAGTCACCTTTGAAGATTGATGAAATTCCATACCTTTCATCCCAGCATAGAGCTGAGAGGATGTCCGTTATCTTTGAATCAAAGTGGCCTAAATCAGATGAGAGGTCGAAGCACCCGGTTCGAACAACGTTGCTTCGGTGTTTCTGGAGGGAGATAGCCATCACAGCATCTCTTGCTGTTATTAGGCTGTCTGTGATGTTCGTAGGGCCAGTTCTCATTCAAAGTTTTGTTGATTTTACATCAGGAAAAGGTAGCTCTGTGTATGAAGGATACTACCTCGTGTTGGTTCTCCTGGGTGCCAAATTTGTAGAAGTTTTGACAACTCACCATTTCAACTTCAACTCTCAGAAGCTTGGGATGCTTATCAGATGCACTCTCATCACTTCTTTGTACAAGAAGGGGCTGAGGCTAACGGGTTCCGCGAGGCAAGATCATGGTGTTGGGCCTATTGTCAATTACATGGCTGTTGATACCCAACAACTCTCTGATATGATGCTCCAGTTACACGCTGTGTGGATGATGCCATTTCAAGTTGGCATTGGTTTGTTTTTGCTCTACAATTGTCTGGGAGCCTCGGTGATTACGGCTACAATTGGACTTCTTGGTGTCATTGCATTTGCTGTGGTGGCTAATAGAAGAAACAAGCGTTTCCAGTTTAATGCCATGATGTGCCGTGACTCAAGGATGAAGGCAGTGAATGAGTTGCTTAATTACATGCGTGTCATCAAGTTCCAAGCATGGGAAGAACATTTCAATGGGAGAATTTTGGGTTTCCGCAAGTCTGAGTTTGAGTGGCTCTCCAAGTTTATGCACTCAATCTGTAGCGTTATTATTGTGTTGTGGAGCACCCCATTGTTGATATCAACTCTGACGTTTGGTACCGCGCTTTTGCTTGGAGTTCGACTTGATGCAGGCACGGTTTTCACCACCACAACTGTGTTTAAGATCCTGCAGGAACCTATTAGGACCTTTCCTCAGAGTATGATATCTCTTTCACAAGCGCTGGTATCACTTGGGAGGTTAGATAGGTACATGTCTAGCAGGGAATTGTCGGATGATTCGGTTGAGAGAGAGGAAGGGTGTAGTGGACGCATTGCTGTGCAGGTCAGAGATGGAACTTTTAGCTGGGATGATGATGGTCAGCTGCAAGACTTGAAAAACATTAATTTGGAGATTAATAAGGGGGAGCTTACAGCAATTGTTGGGACTGTAGGGTCGGGGAAATCTTCACTCCTTGCTTCAATTCTTGGTGAGATGCACAAAAATTCTGGGAAGGTTCAAGTTTGTGGGAGTACTGCTTATGTTGCACAAACATCTTGGATTCAAAATGGGACAATTGAGGAAAACATTCTCTTTGGCTTACCAATGAACAGGCAGAAGTACAATGAAGTGGTCAGAGTTTGTAGCTTGGAGAAAGACTTGGAAATGATGGAGCATGGTGATCAGACAGAGATTGGAGAGCGTGGCATCAACCTAAGTGGGGGTCAGAAGCAGCGCATACAGCTTGCCAGGGCTGTATATCAAGATTCTGATATATATCTTCTTGATGATGTTTTCAGTGCTGTAGATGCACATACTGGCACTGATATATTCAAGGAATGTGTGAGGGGTTCTCTTAAAGGAAAGACCATTATTCTTGTAACACACCAAGTAGACTTCCTACATAATGTGGATCTTATAGTGGTGATGAGGGATGGAGCGATAGTACAATCAGGGAAGTATGATGATCTACTTGCTTCTGGAATGGATTTTAGTGCTCTTGTTGCAGCACATGAGACATCTATGGAACTAGTGGAGCAAGGTGCGGTCGTGCCTGGGGAAAATCTGAATCAGCAAATAAAATCACCAAAGGCAGGTTCTAATAACAGACCAGCCAACGGTGAAAGCAATTCTCTTGACCAGCCCAAGTCTGACAATGAAGGTTCTAAACTCATCAAAGAAGAGGAAAGAGAAACTGGGAAAGTTAGCTTTCGTATCTATAAACTCTACTGCACAGAGGCTTTCGGGTGGTGGGGCATTGGAGGAGTAATCCTTCTTTCTGTGTTGTGGCAAGCATCAATGATGGCTAGTGATTATTGGCTGGCTTATGAAACATCCGAAGAGCGTGCACAGTTCTTCAATCCTTCTACGTTTATTTCTATCTACGGAATTATTGCTGTAGTTTCAATTATTTTGATTGTGCTAAGATCCTACGCTGTTATGGTCCTCGGGTTAAAGACAGCACAGATTTTCTTCAATCAAATTCTCCACAGCATCTTGCATGCCCCCATGTCTTTCTTTGACACCACTCCATCCGGGAGAATTCTTAGCAGGGCATCCACTGATCAGACCAATGTTGATGTCTTTATCCCCTTGTTCCTCAATTTTGTGGTAGCCATGTACATTACAGTGATCAGCATCTTCATAATCACATGTCAAAATTCTTGGCCGACAGCTTTCTTGTTAGTTCCTCTTGCTTGGTTAAACATTTGGTACCGGGGTTATTTTCTTGCTTCCTCTCGTGAGTTAACTCGTCTGGATTCAATTACAAAAGCACCTGTCATTCACCATTTCTCTGAAAGCATTTCGGGAGTCATGACAATCCGCGCATTCAGAAAGCAGAAGCAGTTTTGCGGAGAAAACATTAAACGGGTGAATTCTAATTTGCGAATGGATTTCCACAACTTCAGTTCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCATAGTTTTTTGCTTCTCCGCCATGTTCATGATCATGTTACCCAGCAATATCATAAAGCCAGAGAATGTTGGCTTGTCGCTCTCATATGGGTTATCATTAAACGCCGTGATGTTTTGGGCCATATACATGAGCTGTTTCATTGAAAACAAATTGGTATCTGTTGAGAGGATCAAACAGTTCACAAATATTCCATCCGAAGCAACATGGAGAAACAAGGATCGTGTGCCTCCTGCAAATTGGCCCGGTCAAGGCAATGTTGATATCAAAGATTTGCAGGTTAGATATCGTCCAAACACCCCTTTGGTTCTTAAAGGCATCACCTTAAGCATCAATGGAGGAGAAAAAGTTGGTGTTGTTGGTCGAACAGGAAGTGGAAAATCAACTTTGATTCAAGTTTTCTTCAGGCTGGTGGAACCAACAGGAGGAAAAATAATAATTGACGGCATTGACATATCTATCTTGGGACTTCATGATCTTAGATCACGGTTTGGTATAATCCCTCAAGAGCCTGTCCTTTTTGAAGGAACAGTTCGAACTAACATTGATCCAACTGGACAATATACAGACGAAGAGATATGGAAGAGTTTGGAACGCTGTCAGCTAAAAGAAGCAGTGGCTTCCAAGCCAGAGAAACTTGACTCTTCAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGACAGTTGCTTTGTTTGGGAAGGGTTATGCTTAAGCAAAGTAGGTTGTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTGATTCAAAAGATCATCCGAGAGGACTTTGCAGCACGTACCATCATCAGCATTGCTCATAGAATACCAACAGTAATGGACTGCGATAGAATTCTAGTTGTGGACGCAGGGAGGGCCAAAGAATTTGACTCACCAGCCAACTTGGTCCAAAGGCCATCACTCTTTGTTGCTTTAGTTCAGGAGTATGCCAATCGCTCAAATGGCCTATAA 4503 0.4333 MSFAASTWLTSLSCSLDATPNLPHWLRFIFLSPCPQRALLSGVDVLLLLTLFVFALVKLYSRLTSNANADSHLDKPLIRNNRVSVRTTAWFKLTLTATTLLTLLYAVACILVFVSSTNEPWKQTDGLFWLLQAITQLILIVLIVHEKRFEAVTHPLSLRIYWIANFIVVSLFTASGIIRLVSVGVEDGKHFSFMVDDTVSFISLPLSLFLLFVAVKGFTGIVSGEETEPLIDEETKLHEKSNVTGFASASAISKAFWIWINPLLSKGYKSPLKIDEIPYLSSQHRAERMSVIFESKWPKSDERSKHPVRTTLLRCFWREIAITASLAVIRLSVMFVGPVLIQSFVDFTSGKGSSVYEGYYLVLVLLGAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLTGSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASVITATIGLLGVIAFAVVANRRNKRFQFNAMMCRDSRMKAVNELLNYMRVIKFQAWEEHFNGRILGFRKSEFEWLSKFMHSICSVIIVLWSTPLLISTLTFGTALLLGVRLDAGTVFTTTTVFKILQEPIRTFPQSMISLSQALVSLGRLDRYMSSRELSDDSVEREEGCSGRIAVQVRDGTFSWDDDGQLQDLKNINLEINKGELTAIVGTVGSGKSSLLASILGEMHKNSGKVQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVVRVCSLEKDLEMMEHGDQTEIGERGINLSGGQKQRIQLARAVYQDSDIYLLDDVFSAVDAHTGTDIFKECVRGSLKGKTIILVTHQVDFLHNVDLIVVMRDGAIVQSGKYDDLLASGMDFSALVAAHETSMELVEQGAVVPGENLNQQIKSPKAGSNNRPANGESNSLDQPKSDNEGSKLIKEEERETGKVSFRIYKLYCTEAFGWWGIGGVILLSVLWQASMMASDYWLAYETSEERAQFFNPSTFISIYGIIAVVSIILIVLRSYAVMVLGLKTAQIFFNQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDVFIPLFLNFVVAMYITVISIFIITCQNSWPTAFLLVPLAWLNIWYRGYFLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFRKQKQFCGENIKRVNSNLRMDFHNFSSNAWLGFRLELLGSIVFCFSAMFMIMLPSNIIKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKLVSVERIKQFTNIPSEATWRNKDRVPPANWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRTNIDPTGQYTDEEIWKSLERCQLKEAVASKPEKLDSSVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRILVVDAGRAKEFDSPANLVQRPSLFVALVQEYANRSNGL 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01990 1500 SUPERFAMILY ABC transporter transmembrane region 938 1238 IPR036640 GO:0005524|GO:0016020
Vian3g01990 1500 ProSitePatterns ABC transporters family signature. 760 774 IPR017871 GO:0005524|GO:0016887
Vian3g01990 1500 MobiDBLite consensus disorder prediction 880 913 - -
Vian3g01990 1500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 856 IPR027417 -
Vian3g01990 1500 Pfam ABC transporter transmembrane region 325 588 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian3g01990 1500 Pfam ABC transporter transmembrane region 945 1194 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian3g01990 1500 FunFam ABC transporter C family member 3 1241 1492 - -
Vian3g01990 1500 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 247 1494 - -
Vian3g01990 1500 Gene3D - 1241 1491 IPR027417 -
Vian3g01990 1500 MobiDBLite consensus disorder prediction 880 906 - -
Vian3g01990 1500 FunFam ABC transporter C family member 5 904 1239 - -
Vian3g01990 1500 CDD ABC_6TM_ABCC_D2 944 1233 IPR044726 GO:0140359
Vian3g01990 1500 SMART AAA_5 662 835 IPR003593 GO:0016887
Vian3g01990 1500 SMART AAA_5 1284 1468 IPR003593 GO:0016887
Vian3g01990 1500 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 321 601 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian3g01990 1500 CDD ABCC_MRP_domain1 635 834 - -
Vian3g01990 1500 FunFam ABC transporter C family member 4 618 876 - -
Vian3g01990 1500 FunFam ABC transporter C family member 10 304 617 - -
Vian3g01990 1500 Pfam ABC transporter 1275 1423 IPR003439 GO:0005524
Vian3g01990 1500 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 858 IPR003439 GO:0005524
Vian3g01990 1500 Gene3D - 613 872 IPR027417 -
Vian3g01990 1500 SUPERFAMILY ABC transporter transmembrane region 312 614 IPR036640 GO:0005524|GO:0016020
Vian3g01990 1500 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1221 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian3g01990 1500 Gene3D ABC transporter type 1, transmembrane domain 306 612 IPR036640 GO:0005524|GO:0016020
Vian3g01990 1500 Gene3D ABC transporter type 1, transmembrane domain 904 1239 IPR036640 GO:0005524|GO:0016020
Vian3g01990 1500 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1258 1492 IPR003439 GO:0005524
Vian3g01990 1500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1251 1491 IPR027417 -
Vian3g01990 1500 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
Vian3g01990 1500 CDD ABCC_MRP_domain2 1256 1476 - -
Vian3g01990 1500 Pfam ABC transporter 653 786 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01990 Vian-Chr3 24371247 24378354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01990 632 851 Calmodulin-binding Proteins AT2G36910 30.932 1.68e-25 113