Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01973 ATGTATATGCTCATGGACACTGATGACATGTCATACGAGACACTTTATAATGTGCAGGAATTTCCATCATTAAGTGACCCTCATAGTGATATGTGTTTGGAGATTAATGGCATGTCATATGAGGCAACCAACAACGGCAACTTTGTTGAGCAACGGCGGTCCGACGAATGGCCTCGGCTCCAACGTGAGGTTGCGAACGACACTTCCCCAGACGCGAATCCGCGAAGAGGCATCAGATCTGTAGATCTGAGATTGGAACGAGAGTCGGTTGGGACGTTGGGGATCTCTGTTGCGGCTTCAACTGCTAGTGTTAATGAGGTTCCTTCATTGATTGACCCTTACAGTGATATGCGGTTGGACATTGACCACATGTCATACGAGGAGCTTCTTGAGTTAGGTGAATGGATTAGCAACGTAGACAAGGGTTTGTTACAAGACATTATTGCAAGACAAATGAGGACAAAAACTTACCTATTACCTAATGACTCGGAGGGGTCAACTTCTAAGGAACAGGAATTTGATATTTGCGTAATATGTCAGGATGAATATAAAAACAAAGAGGAGATTGGAATTCTTCAATGCAAACATGAATACCATGCAGATTGTATAAGGAGATGGCTACATGAGAAAAATGTCTGTCCTATGTGCAAATCAAAGCATTAA 663 0.4268 MYMLMDTDDMSYETLYNVQEFPSLSDPHSDMCLEINGMSYEATNNGNFVEQRRSDEWPRLQREVANDTSPDANPRRGIRSVDLRLERESVGTLGISVAASTASVNEVPSLIDPYSDMRLDIDHMSYEELLELGEWISNVDKGLLQDIIARQMRTKTYLLPNDSEGSTSKEQEFDICVICQDEYKNKEEIGILQCKHEYHADCIRRWLHEKNVCPMCKSKH 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01973 220 Pfam Ring finger domain 175 217 IPR001841 -
Vian3g01973 220 SUPERFAMILY RING/U-box 175 219 - -
Vian3g01973 220 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Vian3g01973 220 CDD RING-H2_RNF24-like 174 218 - -
Vian3g01973 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 220 IPR013083 -
Vian3g01973 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 218 IPR045191 GO:0061630
Vian3g01973 220 SMART ring_2 176 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01973 Vian-Chr3 23859110 23866183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01973 112 219 C3H Transcription Factor Family AT2G15530 43.519 8.99e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01973 K19041 - var:108324602 258.455