Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01954 ATGGACTTGTACGGTCGGACCCCCGCCAGGAATGGATCCAACCCGGTCAACCAACCCGAATGGCGCTCACCGGGCACCGACACTGCTCTCGAAGAATCCATGTGGCATTTAACGTTGGGTGGTGGGGAATCTTACCCGGAGCGGCTCGGCGTGCCCAATTGTGTGTATTACATGCGAACTGGTGTGTGTGGATATGGAGGCAGGTGTCGTTACAATCATCCTCGTGACCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACAGGGGAGTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACGGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCTAAAAATGGAGGTGGATATTTAAACCAAGCTCCACTAAATGTCTACGGATACCCATTAAGGCCTGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGTACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCTTCAAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTTCAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCCATTTCCCGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGTGCTCAACCTGCCGTTGGGGGTACATCTTTATATGGAATGACCCAGTTATCATCACCAACATCAGCTTTTGCAAGACCATATACTCCCCTTCCCTCTACCTCTGGCCCTTTAGGAAGCAGCCTGAAGGAACAATTATTTCCTGAAAGACCTGGTGAATCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGAGATCATATTGTGGCACGGCCACTTCTTAACCCTGTTGGACTTCCTTTACGTCCGGGTGTACAACCTTGCGCATTTTATTTGCAAAATGGACATTGCAAGTTTGGCTCGACGTGCAAATTTGACCATCCTTTGGGATCCATGAGATACAGTCCATCGGCATCTTCTCTCATTGATGTGCCAGTTACTCCATATCCAGTTGGTTCTTTGCTGTCTCAGCTGGCCCCTTCAACAACCTCTTCAGAGCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCGGCCAGAATACCTTCTGGAAACAGTTCCGGTACCACTGTTGGTTTAATATTTTCACAAGGTGGGTCTGTTTCCCTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCTCTGCTAGCAGTAGCAGAAGCACAAGACAAAGTGGTGAGATACGTTGA 1413 0.4827 MDLYGRTPARNGSNPVNQPEWRSPGTDTALEESMWHLTLGGGESYPERLGVPNCVYYMRTGVCGYGGRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLNQAPLNVYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVPSPGAQPAVGGTSLYGMTQLSSPTSAFARPYTPLPSTSGPLGSSLKEQLFPERPGESECQYYLRTGDCKFGLACRYHHPRDHIVARPLLNPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTTSSELRPELMSGSKKESFSARIPSGNSSGTTVGLIFSQGGSVSLSDVQLSSQSSASASSSRSTRQSGEIR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01954 470 Gene3D - 48 123 - -
Vian3g01954 470 Gene3D - 295 377 - -
Vian3g01954 470 PANTHER PROTEIN PHOSPHATASE RELATED 40 388 - -
Vian3g01954 470 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Vian3g01954 470 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Vian3g01954 470 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Vian3g01954 470 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Vian3g01954 470 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Vian3g01954 470 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Vian3g01954 470 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Vian3g01954 470 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Vian3g01954 470 MobiDBLite consensus disorder prediction 10 24 - -
Vian3g01954 470 MobiDBLite consensus disorder prediction 447 470 - -
Vian3g01954 470 SUPERFAMILY CCCH zinc finger 51 77 IPR036855 GO:0046872
Vian3g01954 470 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Vian3g01954 470 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Vian3g01954 470 MobiDBLite consensus disorder prediction 1 26 - -
Vian3g01954 470 MobiDBLite consensus disorder prediction 398 427 - -
Vian3g01954 470 Gene3D - 127 173 - -
Vian3g01954 470 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Vian3g01954 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Vian3g01954 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Vian3g01954 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Vian3g01954 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Vian3g01954 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Vian3g01954 470 SUPERFAMILY CCCH zinc finger 300 324 IPR036855 GO:0046872
Vian3g01954 470 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Vian3g01954 470 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01954 Vian-Chr3 23400361 23404663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01954 20 416 C2H2 Transcription Factor Family AT5G18550 52.494 6.00e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian3g01954 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01954 - - gmx:100812475 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01954 3 23400361 23404663 Vian3g01954 3 23400361 23404663 ECH