Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01949 ATGAAACAGAGCACATGCGACTATTGTGGGGACTTCACTGCTCTTCTATATTGCAGAGCAGATTCTGCAAAGTTATGTTTCTTCTGTGACCGCAAAGTCCACTTCCCCAACCAGATTTTCTCCAAGCACTCCCGCACACAGCTCTGTGATGGCTGTGCCGATTCCCCTGCATCGGTGCTCTGTTATACAGAGAACTCTGTTTTCTGCCACCACTGTGACTGCCAAAACCATAACAACCACTTGCTGTCTCGGCAACACCAACGGAGATCCCTTCAGGGGTTCTCTGGCTGCCCTTCTGTCACTCAGATGTTAATTTTTTTGGGTCTTACCGAAGAATCTCTCCTTTCAACTGAGGGAGGAAATTCCCATCACGACGGCCATTCCAATTTGCACGTGTGGAATGCTCCTTCTGTTTTTGGTCCTGAAGATTTCATTTCTTCCTCTTCTTCTTATAAGAATCGTAAGGGTGCGTGCGGGAGACAGAGAGAAGAAATTGTGAGTCAGCTTGGAGAACTAATAAAGTTGGAGGCTGACTTGATTCGTGGAGAAGTAGATGCTGCTGAACCACAAAAGCAATTTGAAAATTTGTCTACGGGTTTTGAACGTGACACAGAGACTAATATGTTTCCTTCATATGAGGCAGGTGTGTTTTGTTGGCATGGAGAAAGCAGTGATCGTGCAAATCAAATTGTTCCTTCTGATAATTCGGTGAGTGATTATAGTAAGAAGCAAGGACAACCATCAAATTATTTAAAGCCTCCTAAAGAGTTAACAAGTCATGAAAGAGATTCGGCATTATTGCGTTACAGAGAGAAGAAGAAAACAAGAAGGTATCACAAGCACATCAGATACGAATCACGAAAAGTTCGCGCAGAAAGCAGAATGAGAATTAAGGGTCGGTTTGTGAAAGATGAAACACAAAAATAA 927 0.4326 MKQSTCDYCGDFTALLYCRADSAKLCFFCDRKVHFPNQIFSKHSRTQLCDGCADSPASVLCYTENSVFCHHCDCQNHNNHLLSRQHQRRSLQGFSGCPSVTQMLIFLGLTEESLLSTEGGNSHHDGHSNLHVWNAPSVFGPEDFISSSSSYKNRKGACGRQREEIVSQLGELIKLEADLIRGEVDAAEPQKQFENLSTGFERDTETNMFPSYEAGVFCWHGESSDRANQIVPSDNSVSDYSKKQGQPSNYLKPPKELTSHERDSALLRYREKKKTRRYHKHIRYESRKVRAESRMRIKGRFVKDETQK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01949 308 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Vian3g01949 308 ProSiteProfiles CCT domain profile. 262 304 IPR010402 GO:0005515
Vian3g01949 308 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vian3g01949 308 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vian3g01949 308 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Vian3g01949 308 MobiDBLite consensus disorder prediction 229 253 - -
Vian3g01949 308 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 304 - -
Vian3g01949 308 CDD Bbox1_BBX-like 6 48 - -
Vian3g01949 308 MobiDBLite consensus disorder prediction 229 266 - -
Vian3g01949 308 Pfam CCT motif 262 304 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01949 Vian-Chr3 23204942 23206685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01949 6 277 C2C2-CO-like Transcription Factor Family AT2G47890 32.787 8.95e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian3g01949 CCT 3.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01949 - - vun:114189938 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01949 3 23204942 23206685 Vian3g01949 3 23204942 23206685 ECH
Vian2g02920 2 49902530 49905705 Vian3g01949 3 23204942 23206685 PCT