Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01946 ATGAATATGTTTGGTGACTTTTCCAATGTTATTGATTGTTCTCAGCTTTCCTTTCAAGAGGTGGCTCTATTGACTAGTTGTCAAAATGTTAACAGAGGCCCTAGAATAATGCACTGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCCATCCCTTTCTTCAGATCAAAATCAACCCGCATGGATACTCTCACGTCAGAACCTTTGACTTGTCAAGAGGAGGGGATGCTGGTACTGCAAAACAAGTCCCCCAGGTGGCATGAACAACTTCAATTCTGGTGTCTTAACTTCAACGGACGTGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCAAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGTAAGGATGTATTCACCATGGATTATCAGTATCCAATCTCGGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 567 0.425 MNMFGDFSNVIDCSQLSFQEVALLTSCQNVNRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDTLTSEPLTCQEEGMLVLQNKSPRWHEQLQFWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01946 188 Gene3D Tubby Protein; Chain A 8 188 IPR025659 -
Vian3g01946 188 ProSitePatterns Tub family signature 2. 173 188 IPR018066 -
Vian3g01946 188 PANTHER TUBBY-RELATED 19 186 - -
Vian3g01946 188 Pfam Tub family 30 183 IPR000007 -
Vian3g01946 188 PRINTS Tubby superfamily signature 166 188 IPR000007 -
Vian3g01946 188 PRINTS Tubby superfamily signature 145 164 IPR000007 -
Vian3g01946 188 PRINTS Tubby superfamily signature 118 134 IPR000007 -
Vian3g01946 188 PRINTS Tubby superfamily signature 100 117 IPR000007 -
Vian3g01946 188 SUPERFAMILY Tubby C-terminal domain-like 31 188 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01946 Vian-Chr3 23133995 23134561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01946 31 188 TUB Transcription Factor Family AT2G47900 76.101 3.79e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vian3g01946 Tub 5.7e-56 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01946 K19600 - gmx:100809257 300.056