Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01933 ATGGGGTCGAAACCGTGGCTTTACCCTGCTTCCACCTATAGAAATTTGGAAACTTTCTGGGATACCGATGAGGACGCGCCTGGTCCTCGTTGTGGACACACCCTCACTGCAGTTGCTGCCACCAAGACGCAGGGTCCCCGTTTGATCCTGTTCGGCGGCGCCACTGCCATTGAAGGAGGATCTTCCTCCGCTCCTGGCATTAGGTTAGCTGGAGTCACAAATACAGTTCATTCATATGACGTGCAAACTAGAAAATGGACTAGCCTTAAACCGGCCGGGGAGCCGCCTTCTCCTAGAGCTGCTCATGCAGCTGCTGCAGTTGGTACCATGGTTGTTTTTCAGGGTGGGATAGGACCAGCTGGGCATTCTACTGATGATCTTTATGTGCTTGACTTGACCAACGATAAATACAAATGGCACAGGGTTGTGGTACAAGGGCAAGGACCTGGACCTCGTTATGGCCATGTAATGGATTTGGTTGCTCAGAGATACCTAGTAACTGTCAGTGGAAATGATGGGCAAAAGCTGCCTGAGAAAAGCTTATACTTGGACAAGCTTATACTTGGACAAGCTTGTACTTGGACAAGCTTATACGAGGACTGTGACTTGGAACTTCCCAATGGGAACCCAATCACAGTTGTGAATGTCTTGTGCTTTAGGAAAAGAGTTGTATCTGATGCTTGGGTTTTGGATACTGCTCAAAAACCTTATGTGTGGCAGAAGTTGAATCCAGAAGGTGACAGACCTTCTGCAAGAATGTATGCAACTGCTAGTGCCCGCTCAGATGGAATGTTTTTACTCTGTGGTGGAAGAGACTCTTCTGGAGCTCCACTGGCAGATGCCTATGGACTGCTCATGCATAGGAATGGCCAGTGGGAATGGACCCTTGCACCTGGAGTTTCCCCTTCACCAAGGTATCAACATGCTGCGGTTTTTGTTGGTGCACGATTACATGTTACGGGAGGTGTTCTTAGGGGTGGACGGTCCGTGGAAGGTGAAGCATCCATTGCAGTATTGGACACTGCTGCTGGGGTTTGGTTGGACAGAAATGGCATTGTATCCTCGTCACGCTCAAACAAAGGTCATGATTATGACCCTTCTTTGGAGCTTATGCGTCGTTGTCGCCATGCAGCAGCAGCTGTTAGTACTCATATATTTATCTATGGTGGGCTAAGAGGAGATATATTACTAGACGATTTCTTAGTAGCTGAAAATTCACCATTGCAGTCTGACATTAATTCTCCTGATAGAGCTTCATCTGTTACAAGCTCCAAACCAAGTCAATCTAACTTAAATTATAATGTAACAACGCCAAAGTTGGATGGTGGATCAGACATTCTTTCATCTAGTGGCTTTGGCATGGACAGAAATTCATTGGAGAAACTGAGGGAAGCATCAGCTGCTGAAGCTGAGGCAGCTACTGCTGTCTGGCAAGCTGTGCAGGCCATATCCAGTAGTCCTGCTGAAGAAACATCTGCATCAGATGACAACTCGCAAGCTCCTGAAACTGTTTCAGATGGAAGTGATACAGAGGGAGATGTTCGCCTTCATCCTAGAGCTGTTGTAGTTGCGAAAGAGGCTGTTGGTAACCTGGGTGGAATGATAATTTCAACTTTGCTTAGGCCTCGCAACTGGAAAGCTCCTGCAAACAGGCGGTTCTTCTTGGATTCTTATGAAGTGGGTGAACTTTGCTATGCAGCCGAGCAAATATTTATGCATGAACCAACTGTTCTTCAGCTTAAAGCTCCTGTTAAAGTATTTGGTGATCTTCATGGTCAGTTTGGTGATTTGATGCGGCTATTTGATGAATATGGATTTCCTTCTACTGCAGGAGACATTACCTATATTGACTACCTGTTTTTGGGAGATTACGTTGATCGAGGACAGCACAGCTTGGAAACCATTACCTTACTACTTGCTCTTAAGGCAGGCTACTATTTAATTTTATGTTGTTTGTCTGGAAATCACGAAGCTGCTGACATAAATGCATTGTTTGGTTTTCGTATTGAGTGCATTGAAAGAATGGGTGAAAATGATGGTATATGGGCATGGACACGATTCAATCAACTTTTTAACTATCTTCCATTAGCTGCTCTTGTTGAAAAGAAAATTATCTGTATGCATGGTGGCATAGGAAGATCTATCAATTCAGTAGAACAAATAGAGAAGCTTGAAAGACCCATAACAATGGATGCAGGATCTATTATTTTAATGGACCTTCTATGGTCTGATCCCACAGAAAATGACAGTGTAGAGGGTTTGAGACCAAATGCTAGAGGCCCAGGGCTTGTCACTTTTGGTCCTGATCGCGTCACAGACTTCTGCAAGAAAAATAAATTACAGCTCATTATAAGGGCCCATGAGTGTGTCATGGATGGTTTTGAACGATTTGCCCAGGGACAACTAATCACCCTTTTTTCTGCTACTAACTATTGTGGAACTGCAAACAATGCGGGAGCTATACTGGTAGTTGGCAGGGGTTTGGTTGTGGTTCCAAAATTAATTCATCCTTTACCACCTCCTCTTCAGTCTCCTGAAACTTCTCCCGAACGTGGTATGGATGAGACATGGATGCAGGAGCTTAATATTCAGAGGCCACCAACTCCTACTCGGGGTAGACCTCAACCAGACCTTGACCGTGGTTCACTAGCATATATATGA 2661 0.451 MGSKPWLYPASTYRNLETFWDTDEDAPGPRCGHTLTAVAATKTQGPRLILFGGATAIEGGSSSAPGIRLAGVTNTVHSYDVQTRKWTSLKPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTVSGNDGQKLPEKSLYLDKLILGQACTWTSLYEDCDLELPNGNPITVVNVLCFRKRVVSDAWVLDTAQKPYVWQKLNPEGDRPSARMYATASARSDGMFLLCGGRDSSGAPLADAYGLLMHRNGQWEWTLAPGVSPSPRYQHAAVFVGARLHVTGGVLRGGRSVEGEASIAVLDTAAGVWLDRNGIVSSSRSNKGHDYDPSLELMRRCRHAAAAVSTHIFIYGGLRGDILLDDFLVAENSPLQSDINSPDRASSVTSSKPSQSNLNYNVTTPKLDGGSDILSSSGFGMDRNSLEKLREASAAEAEAATAVWQAVQAISSSPAEETSASDDNSQAPETVSDGSDTEGDVRLHPRAVVVAKEAVGNLGGMIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMHEPTVLQLKAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKAGYYLILCCLSGNHEAADINALFGFRIECIERMGENDGIWAWTRFNQLFNYLPLAALVEKKIICMHGGIGRSINSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPPLQSPETSPERGMDETWMQELNIQRPPTPTRGRPQPDLDRGSLAYI 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01933 886 Pfam Calcineurin-like phosphoesterase 583 790 IPR004843 GO:0016787
Vian3g01933 886 Pfam Serine-threonine protein phosphatase N-terminal domain 535 581 IPR031675 -
Vian3g01933 886 SUPERFAMILY Metallo-dependent phosphatases 538 847 IPR029052 -
Vian3g01933 886 MobiDBLite consensus disorder prediction 839 886 - -
Vian3g01933 886 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 535 886 - -
Vian3g01933 886 MobiDBLite consensus disorder prediction 484 515 - -
Vian3g01933 886 Pfam Galactose oxidase, central domain 29 96 - -
Vian3g01933 886 FunFam Serine/threonine-protein phosphatase 522 859 - -
Vian3g01933 886 MobiDBLite consensus disorder prediction 484 506 - -
Vian3g01933 886 FunFam Serine/threonine-protein phosphatase 9 187 - -
Vian3g01933 886 Gene3D - 538 847 IPR029052 -
Vian3g01933 886 SUPERFAMILY Kelch motif 223 402 IPR015915 GO:0005515
Vian3g01933 886 FunFam Serine/threonine-protein phosphatase 242 410 - -
Vian3g01933 886 Pfam Galactose oxidase, central domain 115 155 - -
Vian3g01933 886 MobiDBLite consensus disorder prediction 408 448 - -
Vian3g01933 886 Gene3D - 211 410 IPR015915 GO:0005515
Vian3g01933 886 SUPERFAMILY Kelch motif 19 176 IPR015915 GO:0005515
Vian3g01933 886 SMART pp2a_7 555 841 IPR006186 GO:0016787
Vian3g01933 886 Gene3D - 7 206 IPR015915 GO:0005515
Vian3g01933 886 PRINTS Serine/threonine phosphatase family signature 719 746 IPR006186 GO:0016787
Vian3g01933 886 PRINTS Serine/threonine phosphatase family signature 583 610 IPR006186 GO:0016787
Vian3g01933 886 PRINTS Serine/threonine phosphatase family signature 651 675 IPR006186 GO:0016787
Vian3g01933 886 PRINTS Serine/threonine phosphatase family signature 689 715 IPR006186 GO:0016787
Vian3g01933 886 PRINTS Serine/threonine phosphatase family signature 801 817 IPR006186 GO:0016787
Vian3g01933 886 PRINTS Serine/threonine phosphatase family signature 779 799 IPR006186 GO:0016787
Vian3g01933 886 PRINTS Serine/threonine phosphatase family signature 618 645 IPR006186 GO:0016787
Vian3g01933 886 PIRSF STPPP_BSU1 214 536 IPR012391 GO:0004721|GO:0009742
Vian3g01933 886 PIRSF STPPP_BSU1 534 886 IPR012391 GO:0004721|GO:0009742
Vian3g01933 886 PIRSF STPPP_BSU1 1 208 IPR012391 GO:0004721|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01933 Vian-Chr3 22941350 22952206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01933 584 782 Calmodulin-binding Proteins AT5G63870 31.304 1.23e-22 97.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01933 3 22941350 22952206 Vian3g01933 3 22941350 22952206 ECH