Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01926 ATGAAGGAAAAGGTGGATTCCCCCGTTACAGTTCTGGAAGACTATTTCAGGAGCTCGGATTCAGAATCAAGTTCTTCCAAAGAGCCTGCAGTGGATTCTGAATCTCAAGACCTTTCAAAACATGGTTCTAGGTGGCATGCATTTCTTCACTTGTTTAGAAGTGGGTCGAAGAAACATACGAACACGTTGCACCCTCTCGGTGCCCTCAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAGACCATTCTCCCAAGTTGTTTCTTGGATGCAAATGCATCCCCTTGCAGGTCACCGTGGAAGATCTTTACTCATCATGAGATTCAGGTTGCAACCAATTCATTTAGCCAAGAAAATTTGATTGGGAAAGGTGGCTATGCTGAAGTGTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCAATTAAACGTTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTATCAGAGCTCGGTGTAATGGCTCATGTAAACCATCCCAATACTGCTAAGCTGGTTGGCTATGGAGTGGATGGTGGAATGTATCTGGTTCTTGAGTTGTCTGAAAAAGGAAGCCTAGCTTCAGTTCTTTATGGTTCCAAGGAGAAGCTACCATGGTGTACAAGGCACAAAATTGCATTAGGAATAGCTAAGGGTATACTATATCTTCATGAGGGTTGTCAAAGAAGAATCATCCACAGGGATATAAAAGCAGCCAATATCTTGCTCACGGAGGACTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGTTGCCAGAAAATTGGACTCACCACACGGTTTCAAAATTTGAAGGAACTTTCGGTTACCTTGCACCCGAATACTTGCTACATGGCATAGTGGACGAGAAAACAGACATATTTGCATTTGGTGTGTTGCTATTGGAATTAGTGAGTGGGCGTCGAGCACTTGATTATTCACAGCAAAGCCTTGTATTGTGGGCAAAACCATTGCTGAAAAAAAATGATATCATGGAGCTCATTGATCCTTCACTAGCAGGTGACTTCGACTCCAGGCAAATGAATCTTATGCTCTTAGCTGCTTCTTTGTGCATACAACAGTCCTCGATTCGTCGCCCCTCTACAAGACAGGCACGTTGGGCAGAACATCTGCGAGTTGTACAGCTTCTGAACGGCAATCTTAGCTGCTTTAAGGGCATGAAGAAAACCCGAATGCCGTTCTTCAGAAGAGTCTTCCGAGAAGAACTTCATGATTCCGAATAG 1257 0.4391 MKEKVDSPVTVLEDYFRSSDSESSSSKEPAVDSESQDLSKHGSRWHAFLHLFRSGSKKHTNTLHPLGALKLSKRMSTSMRETILPSCFLDANASPCRSPWKIFTHHEIQVATNSFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCTRHKIALGIAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDIFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGDFDSRQMNLMLLAASLCIQQSSIRRPSTRQARWAEHLRVVQLLNGNLSCFKGMKKTRMPFFRRVFREELHDSE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01926 418 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 86 189 - -
Vian3g01926 418 Pfam Protein kinase domain 116 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01926 418 SMART serkin_6 115 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01926 418 MobiDBLite consensus disorder prediction 1 38 - -
Vian3g01926 418 ProSiteProfiles Protein kinase domain profile. 115 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01926 418 PANTHER OS08G0249100 PROTEIN 6 413 IPR046958 -
Vian3g01926 418 SUPERFAMILY Protein kinase-like (PK-like) 96 378 IPR011009 -
Vian3g01926 418 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Vian3g01926 418 Gene3D Phosphorylase Kinase; domain 1 90 189 - -
Vian3g01926 418 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 192 402 - -
Vian3g01926 418 MobiDBLite consensus disorder prediction 14 32 - -
Vian3g01926 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Vian3g01926 418 Gene3D Transferase(Phosphotransferase) domain 1 192 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01926 Vian-Chr3 22816183 22818818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01926 102 377 Trihelix Transcription Factor Family AT1G68690 41.463 4.16e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian3g01926 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01926 - - gmx:100780587 754.977