Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01906 ATGACCATCTCAATGTTCATGTGCAGATTAAGACAACCCATGATAAACATTCCCTGCAGTGGCAAAAAACTGAACGTCAGACAAATTGAGAAAGAGAAAGTAGTGGTTGTAATGGGAGCCACAGGGGCAGGGAAGTCAAGGCTGTCGATTGACATAGCCTCATGTTTTCCATCAGAAATCATAAACTCAGACAAAATTCAAGTGTACCAAGGTCTCGACATAGTCACAAACAAAATCCCAAAGGAAGACCAACGTGGGGTGTACCACCACTTACTGGGAACAATAAACCCCGACACAGACTTCACACCCACTGATTTCATTGACACGTCATCATCGGCCATTGACACCATCACCACAGCCCAGAAGCTTCCAATCATCGTTGGCGGCTCCAACTCCTATCTCGAGGCCTTGATCGACGACGACGATTACAAGTTCCGGTCGCGCTACGATTTTCTCTGCATCTGGGTTGACGTGGCAATGCCCGTGCTTCAATCCTACGTGGCGGAACGGGTCGACGACATGTTCCGTAAGGGAATGATGGAGGAGCTGCGACCCTTTTACAGTCCCGACGGGGATTACTCGAGAGGGATTAGAAGAGCCATTGGGGTTCCTGAATTTGACGAGTATTTTCGGAGGGAGGAGTTTGTGGACGAGGAAACGAAGCAGAGGTTGTTGGAAGATGCGATCAGGGAAATAAAATTGAACACGTGGAAACTTGCCATGAAACAGTTGGGGAAGATTCACAGGCTGAGGAACGTTAAGAGATGGGAGATTCATCGCTTGGACGCCACGCCCGTGTTTCGAAGGCGTGGGGAAGAAGCCAACGAGGCCTGGAAGAAGGTGGTGGCCGAACCGACTGCTATGGTCGTTGCGCGCTTTCTCTATAACTCCAAAAACAATGCTAACGTTGTTTCTGGACTTACACTGTTGCCACCTTCCGAGAATGTTATGGCTGCGGCAACGTGCTAG 969 0.4933 MTISMFMCRLRQPMINIPCSGKKLNVRQIEKEKVVVVMGATGAGKSRLSIDIASCFPSEIINSDKIQVYQGLDIVTNKIPKEDQRGVYHHLLGTINPDTDFTPTDFIDTSSSAIDTITTAQKLPIIVGGSNSYLEALIDDDDYKFRSRYDFLCIWVDVAMPVLQSYVAERVDDMFRKGMMEELRPFYSPDGDYSRGIRRAIGVPEFDEYFRREEFVDEETKQRLLEDAIREIKLNTWKLAMKQLGKIHRLRNVKRWEIHRLDATPVFRRRGEEANEAWKKVVAEPTAMVVARFLYNSKNNANVVSGLTLLPPSENVMAAATC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01906 322 FunFam Adenylate isopentenyltransferase 5, chloroplastic 160 258 - -
Vian3g01906 322 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
Vian3g01906 322 Pfam IPP transferase 67 140 - -
Vian3g01906 322 Pfam IPP transferase 145 244 - -
Vian3g01906 322 Gene3D - 31 294 IPR027417 -
Vian3g01906 322 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 293 IPR039657 -
Vian3g01906 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 189 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01906 Vian-Chr3 22414745 22415713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01906 147 294 C2H2 Transcription Factor Family AT2G27760 30.857 2.95e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01906 K10760 - gmx:100803964 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01906 3 22414745 22415713 Vian3g01906 3 22414745 22415713 ECH
Vian2g02084 2 40577251 40578168 Vian3g01906 3 22414745 22415713 PCT