Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01903 ATGCAAGCAGGTGCTCTGGTGTATGCTTGTAACCAGGGTGCTGAGTGCTGTAAAGTAATGGAAGAGCAAAGTAATGAAGAGATCCCTGTGCAACTAACATCCTGTGACACTGGGGGAACAACCAATGATGTCTCTCACTCAGCTGAGGGTCATCTCATTCCCAACCCAAAATTTTTTATTGCAGCATCATCTGGAAGAAATGAGAGCCACTGGACTTGCTTTCCAAAACCATCCCATAACTATGTTAAGTATCTTTCAGAATCCTCAACTTACTTGCCTAACACTTCCACTGATTACATGATGGGGGGTAGTTATCTACCTGTTGGCAGCATCACTGATGGCAACGTGGTTAATGGATCAGACAGAAACTTCTTTTACAATGATCCAGGGAAAGTCTGTGCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGAAATTAAGAAGGTGGGGTTTTGGAGGGCTGATGAAGGAGAGGAAGTGATTAAAGTTGAAACTGAAAGTAGTCAAAATTTTCTTTATGCTGAGAGTCATCCTTTATGGACAGCAGATTCTCTTGGAGATAAGCATAATGCTTTACATGATCCAATGGTAATGGTTGGTGCACCTGCTTCACTTCCCAAATCAGGATCCAGCTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATCGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCGTACATACTGGACGATATTATTGACTATGTCAAATATTTACAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGAAGAATCAACTGGTATACCACTAGTTTTTCATGAGGGTTACGGTCATTATATCAACCAACAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCTGCAGGAGCTGGTCAGCTACTAGAGAGCAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAGTGAGGCTATGCAAACGTTTGGCGAGAGTGCTCTAGTCTGA 1053 0.4274 MQAGALVYACNQGAECCKVMEEQSNEEIPVQLTSCDTGGTTNDVSHSAEGHLIPNPKFFIAASSGRNESHWTCFPKPSHNYVKYLSESSTYLPNTSTDYMMGGSYLPVGSITDGNVVNGSDRNFFYNDPGKVCAFKPIGSSSNDLEIKKVGFWRADEGEEVIKVETESSQNFLYAESHPLWTADSLGDKHNALHDPMVMVGAPASLPKSGSSSSKEKARVTDRQRRQRIADNLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKEQSGSRLQEESTGIPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSAGAGQLLESKGLFLLPMALVDDLSEAMQTFGESALV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01903 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 262 IPR011598 GO:0046983
Vian3g01903 350 MobiDBLite consensus disorder prediction 204 224 - -
Vian3g01903 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 273 IPR036638 GO:0046983
Vian3g01903 350 CDD bHLH_AtbHLH_like 221 268 IPR045239 -
Vian3g01903 350 Gene3D - 211 280 IPR036638 GO:0046983
Vian3g01903 350 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 333 - -
Vian3g01903 350 Pfam Helix-loop-helix DNA-binding domain 215 263 IPR011598 GO:0046983
Vian3g01903 350 SMART finulus 219 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01903 Vian-Chr3 22374555 22380979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01903 220 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 39.837 7.83e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g01903 HLH 8.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01903 - - gmx:100788949 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01903 3 22374555 22380979 Vian3g01903 3 22374555 22380979 ECH