Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01892 ATGGCTGCACCACTAGGCAATAAACTCCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTATAGCCTCTTCTGGCAACTTTGCCCACAACAAGTGATTCTGGTTTGGGGTGATGGGTACTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCATCTCTCCAAAGAAGCCAGCAACTTCGAGAACTCTATGAATCACTGTCCGCCGGAGAGACAAATCCGCCAACTCGGCGGCCTTGCGCCGCCTTGTCGCCAGAGGACTTAACAGAATCAGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTTGGGTTGCCTGGAAAGGCATTTGCTAGGAGGCAGCATGTTTGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGACAGTGGTGTGCATTCCTTTATTGGACGGCGTTGTTGAGTTTGGTACAACGGATAAGGTTCAAGAAGACCTTAACTTCATCCACCACGTGAAGACATTCTTCGCAGAACACCACCACCCTCTGCCGCCCAAGCCCGCCCTGTCCGAGCACTCAACCTCCAACCCCATCTCCTCTTCCGACCACATCCCCGCCGTCATGTACACTGTCGCAGACCCACCCGCAGCCGATCCCGCCCTAAACGACGAGATGGACGAAGATGAAGAGGAAGAGGATGAGGAGGAGGAGGAAGAAGAGGAGGAGGGGGCGGAGTCCGCCTCTGAGGACGACACCCGAGACCGCATTGCTCGCGGGGTCACGACGCCGGAGATGGAGGACGTGACGAGGGCGGAGCCCAGCGAGCTGATGCAGCTGGAGTTGCCGGAGGATATCCGGGTGGGGTCTCCGAACGACGGATCGAACAACTTGGACTCGGACTTCCACTTGCTGGCGGTGAGTCAAGGAGGGAACGCGGCGGGGCAGGCTGAGTCGAGCGTGAGATGGGGCCCGAGTGAAGAGGCATTACAAGTTCAACTACCAGCTTCAGCCCCTCATCTATTAGACGACTTGACCCAAGAGGACAATCACTACTCTGAAACCGTGTCCAACATTCTCCAAAACCAGTCCAGCCGGTGGCCCACATCGCCGACCTCCGTTGGCTACATCACATACTCCACGCATTCAGCTTTCACAAAGTGGAGCAGCCGCGCCAGCCACCTCTTCCACCCGGCAGTCGACGGCCCCAGCCAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCCTATCTCCATGCCAAGAACCCCGCCGACACCTCTCCCCAAACCGCCGCCGACCCCAAGCTGCGCGGCAAGGGAACGCCGCAGGACGAGCTGAGCGCCAACCACGTGCTCGCGGAGCGCCGCCGCCGCGAGAAGCTGAACGAGCGGTTCGTAATCCTGCGGTCACTGGTCCCCTTCGTCACCAAAATGGACAAGGCATCCATTCTGGGTGACACCATCGAGTATGTTAAGCAGCTGCGGCGGAAGATCCAGGAGCTTGAGGCGCGCAACCGGCACACTGAGGCGGAACACCGTTCCAAGCTCCCTGAGGTAACGGTTCAAAGGACGAGCAGCAATTCGAGCAAGGAGCAGCAGAGGAGTGGGGTGACGGTGATGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGCGGCGAAGGCGACGGCGGTGGAGGCTGAGACGGCAACATCAGTGCAAGTTTCGATCATTGAGAGCGACGCACTGTTGGAGATCGAGTGCGTCCACAGAGAAGGGTTGCTTCTTGATGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTTATTGGGGTGCAGTCATCAATTAGCAATGGGGTGTTCATGGCGGAGCTGAGGGCTAAGGTGAAGGAACATGCGAACGGGAAGAAGGTGAGCATTGTGGAAGTGAAGAAGGCACTTAACCAAATCATTCCCCATCCTCTCCACTGA 1977 0.5675 MAAPLGNKLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAFARRQHVWLTGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLNFIHHVKTFFAEHHHPLPPKPALSEHSTSNPISSSDHIPAVMYTVADPPAADPALNDEMDEDEEEEDEEEEEEEEEGAESASEDDTRDRIARGVTTPEMEDVTRAEPSELMQLELPEDIRVGSPNDGSNNLDSDFHLLAVSQGGNAAGQAESSVRWGPSEEALQVQLPASAPHLLDDLTQEDNHYSETVSNILQNQSSRWPTSPTSVGYITYSTHSAFTKWSSRASHLFHPAVDGPSQWLLKYILFTVPYLHAKNPADTSPQTAADPKLRGKGTPQDELSANHVLAERRRREKLNERFVILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRHTEAEHRSKLPEVTVQRTSSNSSKEQQRSGVTVMEKRKVRIVEGVAAKATAVEAETATSVQVSIIESDALLEIECVHREGLLLDVMQMLREVRIEVIGVQSSISNGVFMAELRAKVKEHANGKKVSIVEVKKALNQIIPHPLH 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01892 658 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 523 IPR036638 GO:0046983
Vian3g01892 658 Pfam Helix-loop-helix DNA-binding domain 457 504 IPR011598 GO:0046983
Vian3g01892 658 MobiDBLite consensus disorder prediction 431 452 - -
Vian3g01892 658 Gene3D - 455 526 IPR036638 GO:0046983
Vian3g01892 658 MobiDBLite consensus disorder prediction 528 544 - -
Vian3g01892 658 SMART finulus 460 509 IPR011598 GO:0046983
Vian3g01892 658 MobiDBLite consensus disorder prediction 193 212 - -
Vian3g01892 658 MobiDBLite consensus disorder prediction 223 285 - -
Vian3g01892 658 MobiDBLite consensus disorder prediction 230 257 - -
Vian3g01892 658 Coils Coil 493 520 - -
Vian3g01892 658 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Vian3g01892 658 PANTHER TRANSCRIPTION FACTOR TT8 7 654 - -
Vian3g01892 658 MobiDBLite consensus disorder prediction 515 545 - -
Vian3g01892 658 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 186 IPR025610 -
Vian3g01892 658 Coils Coil 231 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01892 Vian-Chr3 22139646 22150401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01892 296 655 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.808 2.61e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g01892 bHLH-MYC_N 5.9e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01892 - - gmx:100786815 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02504 2 45717114 45718855 Vian3g01892 3 22139646 22150401 PCT