Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01877 ATGAGAGAGGGGCTGAGATCGCGGGCGCGATTGGGGGCGGTTTCTGGAGGCGAAGAAGTTGTTAGCAAGAGAAAAGTTGTTGTGAAGAGCGAGGCTGTTGCTAAGGATGGTGAGGGTTTGGAGGTGCAGAACTCAACGATTGAGAAGAAGGATGAAGTTGCACGTGATGTTAAAGAAGAATGTGGCTTTGATTTGAATGTGAGTGCAAGTGGAGAGGTTGACTTGGAAGAGAATGGGAGTGGTAGGGGTTGTTTTAGTGGTGGGGGTGATATTGTAGTAGCTGAGGTAGATAAGAAGGCAAAGAAGGAGCAAGGTTCAAATAACGAGGGACTGGTTGGGGGTCGAGTGTTGCGCTCAAGGTCTAAGGGGGGGAAGGATAGAAGAGTGTATTATGGAGAGAATGAGGATGTTGTTTCTGAGAGTGATAGAGAATGTAGTGGGGTTGAGAGTGTGAAAGTTAAGACGGAATGTGAAGAAGCTGGTGAGTTTTTGGGCGATAGTTATGAGAATGATAAAGCTAAGGTGAAGAATGCAGGGAATGGAACGGGGAATTTGAAACGGAAGCGTGGGCGGCCTCCCAAAATAAAGTTGGAAGTGGAAGATCAACCAGTTCATCAGTTGCCACGTAAGCGTGGAAGACCCCCTCTTGCCAGCAAACAAAACCATGTGGTGGTGCCTAATAGAAAAGAAAAGGCTGCCCTTCGAAAAGATAAAAAGGGTTTAACTATGAGACATGATGCTAATGTGAATGCAATTGATGATGCAGATTCAAGTAAATCTGCTGGGGATGAGTTAGAAAAGAAGGAAGTCTCTCCTGTCAAGAAGTCTAAATTTACTAAGGCTTTGGAAACTGGCAACAATGTGGTGGCCTCACCAGTAAGATCAAAAACTGAGAATGCACTTGTCACTGAGAAAAGTGGAAGAAATAGAGTTAAGCAGTTAGTGAGGGATCAAATAAAGGAAATTCTCTCAGCTGCCGGCTGGACAGTTGACTATAGACCTAGGAATGGTAGAGAGTACCATGATGCAGTTTATGTTAGTCTGGACGGACACACACACTGGTCAATCACCTTGGCCTACAAAAGGCTTAAAGAGTATTATGAAGCTGGTAATGGTGAAGGTAAGGCATATGGGCCAGGCTTCAAATTTACACCAATAGCAGCAGAGGATTTCCAAATACTCACTAAGGTAATTAAAAAGCAAAGAAACGGGAAAGTTAAATCAGTAAAGAAAGGGGGAAAGGGTGGGAACAAAAACAAAGAAAGGTCAGGTTCTGGTGCAGCCGTGGGTAAGTCAGTGAAGAGGAAAATGAAAAGGAAACGGTCACCTGGAGACATAGATTCTATGTCACCGAACAGGATGCCAGTTCTTGTGAGGGATCATAAGCGACACAAAACACAAAATAAGCTGCGAAGTGGTCCATTGGTTCGTAATGCTAAGGAGATAGATTCAGAAACTGAGGGATATGTACTGTACAGTGGAAAAAGAACTTTGCTTGCCTGGATGATTGATTTGGGCACAGTCCTTCTAAATGGGAAGGTTCATTATAAGGCACCCGAAGATAAAAGTGCAGCACTGGAGGGTAAGATCACAGGAGACGGCATTCATTGTGGCTGCTGTGATAAAATCATTACAATTTCAGAATTTGAAGTTCATGCAGGAAGAAAATTTGCTGATCCCCTTCAAAATATATATGTGGAGGAAGGAAAGTCTCTTTTACAGTGTTTGCTAGATTCGTGGAATAAGCAAGATGAATCTGAACGTCATGGTTTTCATTTTGTTGATGTTGCGGGTGAGGATCCGAATGATGATACTTGTGGGGTCTGTGGAGATGGTGGAGACCTGATATGTTGTGATGGTTGCCCGTCAACATTCCATCAAGACTGCTTGGATATACAAAAGTTTCCATCTGGTGATTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTCAGTTAATGGATGTTCAGACCAAAAGGATAGTGATGATGATATTGCTGTGTCAAAATTACTCACGTGCCGACTATGTGAGAAAAAATATCACAGATCCTGCATTGAGGCAAATGATTGCAATACTACTGATTACAGTGATGTGATCTTTTGTGGAAACAGATGTCAAGAGTTATCTGAGGGACTTGAAATGCTCCTGGGGGTTAGACATGAAATTGAAGATGGGTATTCCTGGACTTTTATTAGGCGGTCAGAGGCTGGCATTGATGCTTCTCAGATAAAACCTCATATGGTTGAATGTAATTCTAAGCTCGCTGTTGCATTATCAATAATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGGTCAATCTGATCCACAGTATTCTGTATAACCGTGGGTCAAATTTCAATCGACTGAACTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAGATGATTTGTGCTGCAACTATCAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTATTGGAACCCGCTATATGTACAGGCGACAAGGAATGTGCCGTAGGCTTCTAAATGCCATTGAATTGGGACTCAGCTCTTTAAATGTTGAGTTATTAGTGATACCAGCTATCTCAGAGCTCAGAGAAACTTGGACTTCCGTTTTTGGGTTTGAGCCACTTGAATCAACAGTCAAGCAAACCGTACATAATACAAATCTATTGGTATTTCCTCATGTAGATATGTTACAGAAGAAGATATCAAAACATGAATTGGCCGGTCATAATCCAATTCCTTCAGAAGCTGTCAATCTTGGAACCAATCAAATAGCAAACAATTGCAATGGAGTGCGATCATCTGGATCTGATTTGGTCAATTATATTGAGATTCCTCGCTGCCTTAATACATGCCAAATAAAGGACGAAGCCACATCTATTGAATCTGATTGTCATCTTCCTGAGGGTTCATTGAATAATGTACCTGACATTGCTAGCAACATTAATGATTATAGGCAATCTACTAAAGATGAGACATGTGAAGTTGTTTGTCACAAAGGTGATGAGAATCCAGTGATGGACAACACTATGAAAAATGCCTGCGAATATGTGACTGATACTTGTGGTGTAGCTGGAGATAGCCAGTTGAACAATGGCACGGTTCCTTACGAGGAAAGACTGTGTCTCACATCTTGTATTAACACTGAGGCTCCAGAAGGACAATGTGTCAGTGTTTCGTTGGAGGTTGCTGAAAACTTACCTAATCATGTCGCAGTATCAAATGAAGTTATGTCAAATAACAAAAGTGCGGAAGACTCAGAACCCTGCGGTACAGAAAGTATTACAAGGGATTCAAAACTTTCTGCTGACTCTATTCACAAGGATTCATATATAGTTTCTGACAGTTGTGAACGGAGAAGTGACACTGATTGTGGTCAACCAAATTTCATAGGAACAGAAGAACAACGTGGTGAATTTATTAGTGTTTGTGGTTCTCATGGTAGACCCAATGGTGATTGTGCCTCTGGTGAAGGTGCTGCCGCCACTAACTTGTTGTTGCACCTTCCATCACATGACGTGACCAATAACAAGCCTTGGGTGAAAGGGTCTTCAGAGTTACCTGAGCCTGATTTGCAGGTGGATCAAACTGAACAGAACAGTGCTCCCTCCCCATGGAGCCCTAACACCTGTGCATCTACTGGCAGTGCTTCTCGTGGTAGTACTGAGGGGATATTTTTGTCAAACCAAGCCAGTTGA 3711 0.4247 MREGLRSRARLGAVSGGEEVVSKRKVVVKSEAVAKDGEGLEVQNSTIEKKDEVARDVKEECGFDLNVSASGEVDLEENGSGRGCFSGGGDIVVAEVDKKAKKEQGSNNEGLVGGRVLRSRSKGGKDRRVYYGENEDVVSESDRECSGVESVKVKTECEEAGEFLGDSYENDKAKVKNAGNGTGNLKRKRGRPPKIKLEVEDQPVHQLPRKRGRPPLASKQNHVVVPNRKEKAALRKDKKGLTMRHDANVNAIDDADSSKSAGDELEKKEVSPVKKSKFTKALETGNNVVASPVRSKTENALVTEKSGRNRVKQLVRDQIKEILSAAGWTVDYRPRNGREYHDAVYVSLDGHTHWSITLAYKRLKEYYEAGNGEGKAYGPGFKFTPIAAEDFQILTKVIKKQRNGKVKSVKKGGKGGNKNKERSGSGAAVGKSVKRKMKRKRSPGDIDSMSPNRMPVLVRDHKRHKTQNKLRSGPLVRNAKEIDSETEGYVLYSGKRTLLAWMIDLGTVLLNGKVHYKAPEDKSAALEGKITGDGIHCGCCDKIITISEFEVHAGRKFADPLQNIYVEEGKSLLQCLLDSWNKQDESERHGFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQDCLDIQKFPSGDWHCIYCCCKFCGSVNGCSDQKDSDDDIAVSKLLTCRLCEKKYHRSCIEANDCNTTDYSDVIFCGNRCQELSEGLEMLLGVRHEIEDGYSWTFIRRSEAGIDASQIKPHMVECNSKLAVALSIMDECFMPYIDHRSGVNLIHSILYNRGSNFNRLNYSGFVTAILERGDEMICAATIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIELGLSSLNVELLVIPAISELRETWTSVFGFEPLESTVKQTVHNTNLLVFPHVDMLQKKISKHELAGHNPIPSEAVNLGTNQIANNCNGVRSSGSDLVNYIEIPRCLNTCQIKDEATSIESDCHLPEGSLNNVPDIASNINDYRQSTKDETCEVVCHKGDENPVMDNTMKNACEYVTDTCGVAGDSQLNNGTVPYEERLCLTSCINTEAPEGQCVSVSLEVAENLPNHVAVSNEVMSNNKSAEDSEPCGTESITRDSKLSADSIHKDSYIVSDSCERRSDTDCGQPNFIGTEEQRGEFISVCGSHGRPNGDCASGEGAAATNLLLHLPSHDVTNNKPWVKGSSELPEPDLQVDQTEQNSAPSPWSPNTCASTGSASRGSTEGIFLSNQAS 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01877 1236 PANTHER PHD FINGER PROTEIN 12 290 1109 IPR042163 GO:0003714|GO:0045892
Vian3g01877 1236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 667 IPR013083 -
Vian3g01877 1236 MobiDBLite consensus disorder prediction 402 452 - -
Vian3g01877 1236 ProSiteProfiles Zinc finger PHD-type profile. 603 648 IPR019787 -
Vian3g01877 1236 MobiDBLite consensus disorder prediction 99 124 - -
Vian3g01877 1236 MobiDBLite consensus disorder prediction 172 219 - -
Vian3g01877 1236 SMART AT_hook_2 208 220 IPR017956 GO:0003677
Vian3g01877 1236 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Vian3g01877 1236 MobiDBLite consensus disorder prediction 1194 1236 - -
Vian3g01877 1236 MobiDBLite consensus disorder prediction 1079 1102 - -
Vian3g01877 1236 Pfam Tify domain binding domain 528 577 IPR032308 -
Vian3g01877 1236 SUPERFAMILY FYVE/PHD zinc finger 595 647 IPR011011 -
Vian3g01877 1236 MobiDBLite consensus disorder prediction 1181 1236 - -
Vian3g01877 1236 SMART PHD_3 647 707 IPR001965 -
Vian3g01877 1236 SMART PHD_3 605 646 IPR001965 -
Vian3g01877 1236 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01877 Vian-Chr3 21824966 21832444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01877 184 912 PHD Transcription Factor Family AT5G36670 42.181 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01877 - - gmx:100784172 1615.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01877 3 21824966 21832444 Vian3g01877 3 21824966 21832444 ECH
Vian2g02121 2 41065340 41072971 Vian3g01877 3 21824966 21832444 PCT