Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01876 ATGTGCTGCTCAAACTCAGCTACTCCTGACTCAGAAACTCCTCCATTGAGCCCCATTACTACTTCCTCACATCACAACACTCACTCTGCATCTCCTTCTTCCATTATGATAAAGAATTTCAACTCTATCTATGACCCTACCTTAACCTCTAACAACTCTTTCAGCTCCACTTTCTTCTCCACCACCACCACCACCACCACCTTCTTCGAACCAGAACCTGAACCTCAACCCGCCGACTTCGCCACCGCTTTCGCCTCCCAGAGGTTCTTTTTCTCCTCTCCCGGCCACTCAAACTCCCTTCTTCAATACACCAACAAAACTACTCAACACCACTCAGCGTCGCTCAGAGAAGATGCTGCTCATGTTGACAAGATCAAGATGACTAAGAAGGTCTTGTTCAAGGGGAGCGTGGCCGTGGCGACGTACTCGCCGGACCCTTACGTCGATTTCCGGCGGTCGATGCAGGAGATGGTGGAGGCGCGTCCGGAGCTGATGGACGTGAAGTCCAACTGGAATGTGTTGCACGAGCTTCTTCTGTGTTATCTTGTGCTTTTGCTGATCTCCTCGTTAGCCTCATGTCTTTCTAGTGCTGGATCTTCAATTTTTCCTTGTAAATTCAAATAA 624 0.4904 MCCSNSATPDSETPPLSPITTSSHHNTHSASPSSIMIKNFNSIYDPTLTSNNSFSSTFFSTTTTTTTFFEPEPEPQPADFATAFASQRFFFSSPGHSNSLLQYTNKTTQHHSASLREDAAHVDKIKMTKKVLFKGSVAVATYSPDPYVDFRRSMQEMVEARPELMDVKSNWNVLHELLLCYLVLLLISSLASCLSSAGSSIFPCKFK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01876 207 MobiDBLite consensus disorder prediction 1 31 - -
Vian3g01876 207 NCBIfam uncharacterized plant-specific domain TIGR01568 137 184 IPR006458 -
Vian3g01876 207 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 43 183 IPR038933 GO:0045892
Vian3g01876 207 ProSiteProfiles OVATE domain profile. 139 203 IPR006458 -
Vian3g01876 207 Pfam Transcriptional repressor, ovate 143 184 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01876 Vian-Chr3 21813821 21814444 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vian3g01876 Ovate 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01876 - - gmx:102660213 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01876 3 21813821 21814444 Vian3g01876 3 21813821 21814444 ECH
Vian2g02122 2 41076546 41077238 Vian3g01876 3 21813821 21814444 PCT