Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian3g01862 | ATGGAGCTTATCTCTAAAGTTCGAAACCCATTTATCGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGTTATTGTGAAGGCGGAGATATGACTGAAGCTATTAAAAAGGCCAATGGCGTACATTTTCCTGAAGAGAGACTCTGTAAGTGGCTGGTTCAACTGCTCATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTCGGCCTGGCTAAAATGTTGACATGCGATGATCTTGCATCCTCGGTTGTTGGCACTCCAAGTTATATGTGCCCTGAACTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTCAAAGCTCTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCATTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGGGGGCTCGTTAAGAGTATGTTGCGGAAGAATCCAGAGCTTCGGCCCAGTGCGGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCTAGAAGAAGTACTTACCCATTCCAATGGTCTGATTCAAACTATGTAAGGAGGACTCGGTTTGTAGAGACGGATTCTGTTTCTACTCTTTCTGGAAGAGGTAAAAGATTGTCATTCAGCAATGACAGGGCGTTGAATCCTAGTATTTCTGGAACTGAACTAGGTTCTGTGTGTTCTACTCAAAGAGGTCAAGGATTCTCTATGTGTTCAAAAGAGAAACACTGTGAGCTGTCTGTTGGTTGTGTCCGTGAAGGATGCAATTCCAACAAGTCAAGAGACACCAAGTCGTCCACTGTTGATAGGGTGCCAAGATTGAGAACAGCTAAAGAATATGCCACTCCACGAAGGCAGCCAATACCATCAAAGACATCCCTTACAGGTTTCAAGCGTGAGTTACTTCCAGTATCTTCTACTCCTGGTGTTAAATTTACCCCACCATCTCGCAGAGCTTCCCTTCCACTCCCTTCCAAAACCATGTGCATGACCACCCCATATAGAGCTAATGTTGGTCTTCTTCGGGGCATGGACTCTCCTGATGTTTCTGTCAATGCACCAAGAATCGACAAGATTGCTGAATTCCCTCTAGCCTCTTGTCAGGATTCTCTCTTCCCTGTTCATGGAACTTCATCAACCTCGGCTCAGTGTTCTTCTGGTTCCCCAAAGAGTGCCGACTGCTTAATCACGAAAGACAAGTGCACAATCCAAGTTGTGGACAAAGTCAGTGTCCCATCAAGTGTACAATCCCCAAAGAGTGCTGCTCCAGTTTCACATGAATGCTCTGAGCATGCTGTTTCAAGCCACTTCTCTGCCGAGTTTTGCCAGCGCAGGTTTGACCCCTCGTCTTACCAGCAACGTGCAGAGGCATTGGAGGGTTTGCTTGAGTTCTCAGCTCGGCTTCTACAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTTTCCCCAAGAGAGACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTTGCCTGA | 1677 | 0.4425 | MELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTRFVETDSVSTLSGRGKRLSFSNDRALNPSISGTELGSVCSTQRGQGFSMCSKEKHCELSVGCVREGCNSNKSRDTKSSTVDRVPRLRTAKEYATPRRQPIPSKTSLTGFKRELLPVSSTPGVKFTPPSRRASLPLPSKTMCMTTPYRANVGLLRGMDSPDVSVNAPRIDKIAEFPLASCQDSLFPVHGTSSTSAQCSSGSPKSADCLITKDKCTIQVVDKVSVPSSVQSPKSAAPVSHECSEHAVSSHFSAEFCQRRFDPSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA | 558 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian3g01862 | 558 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 74 | 86 | IPR008271 | GO:0004672|GO:0006468 | |
Vian3g01862 | 558 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 261 | IPR011009 | - | |
Vian3g01862 | 558 | FunFam | Serine/threonine-protein kinase Nek3 | 35 | 281 | - | - | |
Vian3g01862 | 558 | ProSiteProfiles | Protein kinase domain profile. | 1 | 207 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vian3g01862 | 558 | PANTHER | SERINE/THREONINE-PROTEIN KINASE NEK | 1 | 514 | - | - | |
Vian3g01862 | 558 | Pfam | Protein kinase domain | 2 | 206 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vian3g01862 | 558 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 249 | - | - | |
Vian3g01862 | 558 | SMART | serkin_6 | 1 | 207 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian3g01862 | Vian-Chr3 | 21545115 | 21550140 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian3g01862 | 1 | 238 | MAP Kinase Kinase Kinase | AT1G53570 | 30.980 | 8.75e-33 | 130 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | NEK | Vian3g01862 | Pkinase | 6.9e-50 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian3g01862 | K08857 | - | gmx:100810347 | 981.474 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian3g01862 | 3 | 21545115 | 21550140 | Vian3g01862 | 3 | 21545115 | 21550140 | ECH | |
Vian6g00940 | 6 | 26645051 | 26651038 | Vian3g01862 | 3 | 21545115 | 21550140 | PCT |