Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01862 ATGGAGCTTATCTCTAAAGTTCGAAACCCATTTATCGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGTTATTGTGAAGGCGGAGATATGACTGAAGCTATTAAAAAGGCCAATGGCGTACATTTTCCTGAAGAGAGACTCTGTAAGTGGCTGGTTCAACTGCTCATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTCGGCCTGGCTAAAATGTTGACATGCGATGATCTTGCATCCTCGGTTGTTGGCACTCCAAGTTATATGTGCCCTGAACTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTCAAAGCTCTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCATTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGGGGGCTCGTTAAGAGTATGTTGCGGAAGAATCCAGAGCTTCGGCCCAGTGCGGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCTAGAAGAAGTACTTACCCATTCCAATGGTCTGATTCAAACTATGTAAGGAGGACTCGGTTTGTAGAGACGGATTCTGTTTCTACTCTTTCTGGAAGAGGTAAAAGATTGTCATTCAGCAATGACAGGGCGTTGAATCCTAGTATTTCTGGAACTGAACTAGGTTCTGTGTGTTCTACTCAAAGAGGTCAAGGATTCTCTATGTGTTCAAAAGAGAAACACTGTGAGCTGTCTGTTGGTTGTGTCCGTGAAGGATGCAATTCCAACAAGTCAAGAGACACCAAGTCGTCCACTGTTGATAGGGTGCCAAGATTGAGAACAGCTAAAGAATATGCCACTCCACGAAGGCAGCCAATACCATCAAAGACATCCCTTACAGGTTTCAAGCGTGAGTTACTTCCAGTATCTTCTACTCCTGGTGTTAAATTTACCCCACCATCTCGCAGAGCTTCCCTTCCACTCCCTTCCAAAACCATGTGCATGACCACCCCATATAGAGCTAATGTTGGTCTTCTTCGGGGCATGGACTCTCCTGATGTTTCTGTCAATGCACCAAGAATCGACAAGATTGCTGAATTCCCTCTAGCCTCTTGTCAGGATTCTCTCTTCCCTGTTCATGGAACTTCATCAACCTCGGCTCAGTGTTCTTCTGGTTCCCCAAAGAGTGCCGACTGCTTAATCACGAAAGACAAGTGCACAATCCAAGTTGTGGACAAAGTCAGTGTCCCATCAAGTGTACAATCCCCAAAGAGTGCTGCTCCAGTTTCACATGAATGCTCTGAGCATGCTGTTTCAAGCCACTTCTCTGCCGAGTTTTGCCAGCGCAGGTTTGACCCCTCGTCTTACCAGCAACGTGCAGAGGCATTGGAGGGTTTGCTTGAGTTCTCAGCTCGGCTTCTACAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTTTCCCCAAGAGAGACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTTGCCTGA 1677 0.4425 MELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTRFVETDSVSTLSGRGKRLSFSNDRALNPSISGTELGSVCSTQRGQGFSMCSKEKHCELSVGCVREGCNSNKSRDTKSSTVDRVPRLRTAKEYATPRRQPIPSKTSLTGFKRELLPVSSTPGVKFTPPSRRASLPLPSKTMCMTTPYRANVGLLRGMDSPDVSVNAPRIDKIAEFPLASCQDSLFPVHGTSSTSAQCSSGSPKSADCLITKDKCTIQVVDKVSVPSSVQSPKSAAPVSHECSEHAVSSHFSAEFCQRRFDPSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01862 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672|GO:0006468
Vian3g01862 558 SUPERFAMILY Protein kinase-like (PK-like) 3 261 IPR011009 -
Vian3g01862 558 FunFam Serine/threonine-protein kinase Nek3 35 281 - -
Vian3g01862 558 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01862 558 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 514 - -
Vian3g01862 558 Pfam Protein kinase domain 2 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01862 558 Gene3D Transferase(Phosphotransferase) domain 1 1 249 - -
Vian3g01862 558 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01862 Vian-Chr3 21545115 21550140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01862 1 238 MAP Kinase Kinase Kinase AT1G53570 30.980 8.75e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vian3g01862 Pkinase 6.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01862 K08857 - gmx:100810347 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01862 3 21545115 21550140 Vian3g01862 3 21545115 21550140 ECH
Vian6g00940 6 26645051 26651038 Vian3g01862 3 21545115 21550140 PCT