Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01856 ATGTGGGATCGTGAAAAGTACAAAATGGCTTCATCCCATGGTATCACTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCAGATAGAGATGATGAAAGAAATCGGGTGGAAACAGCTGGAGGTCAAGTTCAAAATTGGGGTGGTGTGCCTCGCATAAATGGTCAGCTGGCTATTACACGGGCTATCGGTGACCTACCCTTTAAAAGTTATGGCGTTATATCTGCACCAGAAGTGACTGATTGGCAGCCTCTGACTGCTAATGATAGCTATTTGGTGGTAGCATCGGATGGTGTATTTGAGAAGACAAGCTTGCAGGATGTCTGTGATTTGTTGTGGGAATTGCACAGTTACAGTAACATGAGATCAGAGTGCGCCCATTCTTCCTATTCGTTAGCAGATTTAATTGTTAATAATGCCTTAAAAACGGGCAGTATGGACAATGTGGCAGCCATTGTCATTCCTCTGGAGTCTATCAAATCCTCTGTAAACTCGCGTAGGGGAAGTTATATTGGAAAGAGGGATGCTGGTTTCCCATTTGGTGTGCAAGAATCTTTCTTCAAAAGCTCAGGTAATGGCATCTTGTCTGATCTTATGCACTTGGAGCACCCTCATCTGGTAGATACGAAGTTGAAGCGAATATTGGTTGAAGTGAAAGATGGTGATTTTGGCTGCTTTTATTTAGCTGAAAATCTTGATGAAATAGAGGACTCCAAGCAGATTGCCAAAAAAGTTGACTGGGATGACTATTTGTATGAACTACCTCCACCTCCACCCGATTCCCTTTCTCAGCATCCCACTTCAGGGGGTCTTGTCGATTTATACAATAACCAAAACTTTTGCTTTGACTATGGTCCAACTATTAATGAACCTGAAGACCGATGCATAAATCCTGAAGGCTTTGCTAGTTTCATTGGTCTTCTTGAATCAATTCCTTTGCATGATACTGATTCTAGTAATGGGTCTTCTGATTATTCAATGCCTGATTTGAGGTATGTGTTGAAGAAGAGTTTTGGACGTGGGTCATTTGGTGAAGTGTGGTTGGCTTTTCATTGGAATTGTTATCAAGATACTAATGTTGAAAAAGAGAACAGGGATGATACAAATACAACCAACAGCACAACGGCTTCTGATTGTCAGAATGGTCCTTCTAATTACACCCTGTACATTTTGAAACGTATAATGGTGGAGAGGGGGTCAGCTGTTTACTTAAGTGGTCTAAGGGAGAAGTACTTCGGAGAAGTTTTTTTAAATGCCTCTACATGCTTTGAAGATCCACTATCGACTGGAAAATCAAACTGTGTCTTGGAATCATCACATGAGAATTCATTTCCGAACAAATTTCGACCACAAAGAACCCTATATGAAGAAGGCTTGAATCATATTGCAAGATATGTGGAATCTTTTGAGTCTCAAGCAAACGAAATTTGGCTTGTATTTAGTTTTGAAGGTGTGTCACTGTCAAAACTTCTATATTCCATGGAAGATGCATATGGTACTACTGAGCAAGAAAGACTTGAGCAAGCTAAACACGCTCAGATACTACGACCCTCAAAGTGGTGGCATTGGTTGAAAACAACAGAAGAAGGGCAGGCAGAAATGCGTAACCTTATCTGGCAGCTGTTATTAGCTCTCAAGTCCTGTCATGATCGCAACATCACACACAGAGATATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAAACAGGGAGATGCTTGAAAGAGATTCCCACTAAAGTTAATAATTCTTCCACCAAAATGCGTATTATTGACTTTGGAAGTGGACTTGATGAATACACATTAAATAATTTGTATGGTTCTACTGGGCCTTCGAGAGCTGAGCAAACCTATGAGTATACGCCTCCTGAAGCTTTACTAAATGCTACATGGTATCAAGGGCCAACAAGCTCGACTTTGAAATATGACATGTGGAGCGTTGGTGTTGTGATGTTAGAGTTGGTCTTAGGGACACCAGATGTTTTTCAGATAAATGCTTTAACACGGACTCTATTAGATCAACATCTAGAAGGCTGGAATGAGGGCGTGAGGGAGCTGGCATATAAACTTAGATCATTCATGGAATTGTGCATTTTAATCCCTGGGATCTCCAGGTCCAGCAGTTTCTCAAAAAAGTATGACACAGTGAACCAAGTTGGAGTTTCACCTGCATCTTGGAAATGCTCTGAAGAATTCTTTTCTCGTCAAATTAGGAATCGAGATCCCCTTAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTAGTGCGTCGTTTGTTACATTGGGATCCAGAGGATCGGCCAAGTATTGATGAGGCTCTTCAACATCCTTATTTCCAACATCCCCGCAGAGAGTGA 2367 0.4106 MWDREKYKMASSHGITHFAVKELTSDHHPDRDDERNRVETAGGQVQNWGGVPRINGQLAITRAIGDLPFKSYGVISAPEVTDWQPLTANDSYLVVASDGVFEKTSLQDVCDLLWELHSYSNMRSECAHSSYSLADLIVNNALKTGSMDNVAAIVIPLESIKSSVNSRRGSYIGKRDAGFPFGVQESFFKSSGNGILSDLMHLEHPHLVDTKLKRILVEVKDGDFGCFYLAENLDEIEDSKQIAKKVDWDDYLYELPPPPPDSLSQHPTSGGLVDLYNNQNFCFDYGPTINEPEDRCINPEGFASFIGLLESIPLHDTDSSNGSSDYSMPDLRYVLKKSFGRGSFGEVWLAFHWNCYQDTNVEKENRDDTNTTNSTTASDCQNGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEVFLNASTCFEDPLSTGKSNCVLESSHENSFPNKFRPQRTLYEEGLNHIARYVESFESQANEIWLVFSFEGVSLSKLLYSMEDAYGTTEQERLEQAKHAQILRPSKWWHWLKTTEEGQAEMRNLIWQLLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTKVNNSSTKMRIIDFGSGLDEYTLNNLYGSTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPDVFQINALTRTLLDQHLEGWNEGVRELAYKLRSFMELCILIPGISRSSSFSKKYDTVNQVGVSPASWKCSEEFFSRQIRNRDPLKIGFSNIWALRLVRRLLHWDPEDRPSIDEALQHPYFQHPRRE 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01856 788 SMART serkin_6 333 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01856 788 FunFam uncharacterized protein LOC106771884 isoform X8 520 783 - -
Vian3g01856 788 ProSiteProfiles PPM-type phosphatase domain profile. 1 157 IPR001932 -
Vian3g01856 788 Pfam Protein phosphatase 2C 21 150 IPR001932 -
Vian3g01856 788 PANTHER OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 329 783 - -
Vian3g01856 788 Gene3D Transferase(Phosphotransferase) domain 1 520 783 - -
Vian3g01856 788 SUPERFAMILY Protein kinase-like (PK-like) 332 784 IPR011009 -
Vian3g01856 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Vian3g01856 788 SUPERFAMILY PP2C-like 20 159 IPR036457 -
Vian3g01856 788 ProSiteProfiles Protein kinase domain profile. 333 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01856 788 Gene3D - 10 175 IPR036457 -
Vian3g01856 788 CDD PP2Cc 20 157 IPR001932 -
Vian3g01856 788 Pfam Protein kinase domain 528 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01856 Vian-Chr3 21431688 21475670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01856 397 785 PP2C-type Phosphatase Gene Family AT3G63340 64.781 4.13e-176 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Vian3g01856 Pkinase 4.1e-26 CL0016