Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01855 ATGAATTATATATATCCAGTGAAAGAAGAATGCTTGGAATCAGCACTACCACCATCATCATCATATCAGTTAGGTAATGAGTATCCACCAAAGCCAATCGAGGAACTTCATTACGCTGGACCACCACCATTCCTCACAAAAACTTTTGATGTTGTTGATGACCCAGTTACCAACCACGTAATTTCTTGGAGCAGAGACGGCACAAGCTTTGTGGTCTGGGATCCACATACCTTCTCTGCAAGTCTCCTTCCCAGATACTTCAAGCACAGCAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTACGGTTTTAGGAAAATTGATCCAGATAGATGGCAGTTTGCAAACGAAGGATTCATCAGAGGGCATAAGCATTTGTTGAAAAGCATAAGGAGAAGGAGGGCACCTTCCCAACTAACACAAAGTCACAGTGTTGAAGTTGGACGTTTTGAGTTAGACAAAGAGGTTGATCGTTTGAAGCACGAGAAGATAGTGTTGATGATGGAGCTTATGAATCTAAGACAGCAGCAGCAGAAAGCCAGAATGTGCATTAAGGAGATGGAGCAAAGGTTACAAGTGACTGAAATCAAGCAGAAACATATGATGGCTTTCTTAGCTAGAGCCATAAAAAATCCTGCCTTCATACACCAACTCCTAAAGAAAGAGAAGAGAAAGGATCTTGAAGAAGCCTTGACTAAAAAGAGAAGACAAATTAAGCAAGGAGTTAGAGGTATTGGAGAATCAAGTAGTAGGGGTGAAGGAAGGAGCAGTGTTAAAGTTGAGGCCTTGGAATTTGGGGAGTACGATTGTGATTTTGGAGTGTCAGAGTTGGAAAAGTTAGCTATGGAAATGCAGGGATGTGGAAAGGGTAGGATAGACCGGGAGGTAGAACCTGAGGCACCAGAATCACAAGAGAGACTGGATAGAGTACTTGATGAAGAGTTTTGGGAAGAACTGATGTTCAGTGAGAAATTTGATGGTCGATTTGACATTCCAACTACTGAAGATAACGATGAAGATGTTGTCAACATATTGGCCAATGAACTTGGTTGCTTGGATTCAAGTCATTAA 1071 0.4155 MNYIYPVKEECLESALPPSSSYQLGNEYPPKPIEELHYAGPPPFLTKTFDVVDDPVTNHVISWSRDGTSFVVWDPHTFSASLLPRYFKHSNFSSFVRQLNTYGFRKIDPDRWQFANEGFIRGHKHLLKSIRRRRAPSQLTQSHSVEVGRFELDKEVDRLKHEKIVLMMELMNLRQQQQKARMCIKEMEQRLQVTEIKQKHMMAFLARAIKNPAFIHQLLKKEKRKDLEEALTKKRRQIKQGVRGIGESSSRGEGRSSVKVEALEFGEYDCDFGVSELEKLAMEMQGCGKGRIDREVEPEAPESQERLDRVLDEEFWEELMFSEKFDGRFDIPTTEDNDEDVVNILANELGCLDSSH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01855 356 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g01855 356 Gene3D - 37 134 IPR036388 -
Vian3g01855 356 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 243 IPR027725 -
Vian3g01855 356 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g01855 356 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g01855 356 Coils Coil 220 240 - -
Vian3g01855 356 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Vian3g01855 356 FunFam Heat shock transcription factor 1 37 134 - -
Vian3g01855 356 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g01855 356 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g01855 356 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian3g01855 356 Coils Coil 156 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01855 Vian-Chr3 21421161 21422596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01855 30 355 HSF AT3G22830 47.514 5.34e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian3g01855 HSF_DNA-bind 3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01855 K09419 - gmx:100811945 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02142 2 41316731 41318496 Vian3g01855 3 21421161 21422596 PCT