Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian3g01836 | ATGAAACTGGTGCGGCATCCCCACATCGTTCAACTCAAGGAATTCATGGCCACAAAAGGAGAAATATTCCTCGTCATGGAATACGTTAAGGGTAGCGAGCTCTTCACAAAAGTCAACAAAGGAAAACTCTCTAAAAACCTTGCCAGAATGTACTTCCAACAACTCATCAGCATCGTCGACTACTGCCGCAGTCGCGGCGTCACCTACCGCGACCTCAGGCTGGAGAATCTCCTTTTGGACCAGAACGAGGACTTAAAACTCTCTGACTTTAGACTCTCAGCGCTGCCAAAGCAACGCCACACACCAAGGACATGCTCCTATTTACCCTTCCAAGGTGAGAATGTTATGAGAATCTATAGAATAGTGTTTAGAGCTCAGTATGAATTACCCGAATGGGTTTCATCGTAG | 408 | 0.4632 | MKLVRHPHIVQLKEFMATKGEIFLVMEYVKGSELFTKVNKGKLSKNLARMYFQQLISIVDYCRSRGVTYRDLRLENLLLDQNEDLKLSDFRLSALPKQRHTPRTCSYLPFQGENVMRIYRIVFRAQYELPEWVSS | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian3g01836 | 135 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 67 | 79 | IPR008266 | GO:0004672|GO:0006468 | |
| Vian3g01836 | 135 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 1 | 98 | - | - | |
| Vian3g01836 | 135 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 134 | IPR011009 | - | |
| Vian3g01836 | 135 | SMART | serkin_6 | 1 | 133 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vian3g01836 | 135 | ProSiteProfiles | Protein kinase domain profile. | 1 | 135 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vian3g01836 | 135 | Pfam | Protein kinase domain | 1 | 105 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vian3g01836 | 135 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 107 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian3g01836 | Vian-Chr3 | 21108317 | 21108843 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian3g01836 | 1 | 134 | CBL-interacting serine-threonine protein kinases | AT5G10930 | 52.023 | 1.62e-51 | 167 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_CAMKL-CHK1 | Vian3g01836 | Pkinase | 4.3e-25 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian3g01836 | - | - | vun:114167214 | 199.134 |