Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01832 ATGACGATGAAGAGGCTGGTGAGAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTTTGCAACAAGTTCCTCAAGGAGGCCACTGCCATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTGGAGAAAATGAGGCCAGATAACAGTTTGCAGGATTTAAGGAACAAAATTTTCCCTTTCAATAAAAGAAAGCAGAAGGCACCTGTAGCCATCCCTTCAGTACTATTACCAGCTAGAAGAAAGGAAAGATCACTGTCATCTTTGGTTGTCAGCACTCCAAGGGTATCTACACAATCAACCATGACAGGGAGAAGAACAAAACCTACAAGAAAGGCACTAGGCCTGCAGGGCTCTGGTTTCTCTGTTGAAAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCGCCAAGATAGTTCATGCTCACCTGACACTTCAAACAAGTCTGCAAAGAGTGCGGGACAGAGTTTGTCACCTTGTAAAAATAGTCAATCCATATGCAATAGAGGACTGCAGAATGGTGCTGAAACACAGGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGTCTTTCAAGTCTAATGTGCAATCGTCTAATGCTAAACCAGAATCCGTGAAAGTAAATGACAGCGATAATAAAGTGCTGAAAGGCAAACATGAGGAAAATAAGCGCAAGGCAAAAGTTGAAGATGAAAAGATTAGCACTGATCATGTCTCTCCAGATACAGCAAAACCCAACAAACTGCGAAGAGTTCGCCCAAAAAAGGAACCTGTTTTTGGAGAATCTAGAATATCCCCTCAGGCTGTTCTGGATGCTAATGATAGTAACCTCTTATGGAATGACTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAATCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATGTAAGAATAAAGGACGGAAGCATACCTGTCTCATTTATCCAAAAACTGTTAATGAAGAAACTGGGCCTGAAAAGTGAGGATGAGGTTGAGATCAAATGCATGGGACATCCTGTGCTTCCTTCACTACAGGTACAGAATTTAGTTGAATTGTGGCTTGATACGGCATCTACAGGCCACAGAATTCCTGCAACCATAGGATCCTCAGGGAAAGATTTTGTGATGATCCTAACCTATGGTCGGAAGGTCCAACAACCTTGA 1290 0.4186 MTMKRLVRVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKITDEELENCPVCNIDLGIVPLEKMRPDNSLQDLRNKIFPFNKRKQKAPVAIPSVLLPARRKERSLSSLVVSTPRVSTQSTMTGRRTKPTRKALGLQGSGFSVEKLIKKEEELLEDRQDSSCSPDTSNKSAKSAGQSLSPCKNSQSICNRGLQNGAETQEAKWDLWKTLNYLAEAASRSKSFKSNVQSSNAKPESVKVNDSDNKVLKGKHEENKRKAKVEDEKISTDHVSPDTAKPNKLRRVRPKKEPVFGESRISPQAVLDANDSNLLWNDSIWFSLAASENQEGDAPLPQIPSSYVRIKDGSIPVSFIQKLLMKKLGLKSEDEVEIKCMGHPVLPSLQVQNLVELWLDTASTGHRIPATIGSSGKDFVMILTYGRKVQQP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01832 429 MobiDBLite consensus disorder prediction 115 142 - -
Vian3g01832 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Vian3g01832 429 MobiDBLite consensus disorder prediction 167 191 - -
Vian3g01832 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Vian3g01832 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 426 IPR044807 GO:0004842
Vian3g01832 429 MobiDBLite consensus disorder prediction 226 243 - -
Vian3g01832 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Vian3g01832 429 MobiDBLite consensus disorder prediction 226 295 - -
Vian3g01832 429 CDD RING-HC_PCGF 18 61 - -
Vian3g01832 429 SUPERFAMILY RING/U-box 15 85 - -
Vian3g01832 429 MobiDBLite consensus disorder prediction 244 295 - -
Vian3g01832 429 MobiDBLite consensus disorder prediction 115 134 - -
Vian3g01832 429 SMART ring_2 20 60 IPR001841 -
Vian3g01832 429 MobiDBLite consensus disorder prediction 161 191 - -
Vian3g01832 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01832 Vian-Chr3 21088262 21092772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01832 1 348 C3H Transcription Factor Family AT2G30580 48.148 1.04e-93 284