Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01826 ATGGAAGCTGGTCTCATGAAGGAGAAGATGGTGTTTGAGGAAACTGAACTCAGGCTGGGACTTGGACTTGGACTACCTGGAAATGGAGGCACAGCAACTGAAGCAGCAGCAGCAGCAGCAGAAGGAGTGAGGAAGAGAGGCTTCTCTGAAACTCAGACTGAAACAACCACCGTTGATTTGAAGCTTAACCTCTCACCAAAGGAACTTTCTTCTGCTGATGGAACAGATCCACGTAATAAGCCAAACACTTCGCCTAAGGAGAAAACCCTTTTGCTTCCCGATCCCGCCAAACCTCCTGCTAAGGAGCAAGTTGTGGGATGGCCACCAGTGAGGTCATTCAGGAAGAACATGTTTGCAGCACAAAAGAACATGGGAGAGGAAAGTGAGAAGAACAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTCCGGAAAGTGGACTTGAAGATGTACAAGAGTTACCCAGAACTCTCTGATGCCTTGGGAAAAATGTTTAGCTCCTTCACCATTGGGAATTGTGAATCCCAAGGCTTTAAGGATTTCATGAATGAGAGCAAGTTGATGGATCTTTTGAACAGCTCCGACTGTGTCCCAACCTATGAAGACAGGGATGGTGACTGGATGCTTGTCGGTGATGTTCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGGAAGGAAGCCATTGGACTGGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 762 0.4711 MEAGLMKEKMVFEETELRLGLGLGLPGNGGTATEAAAAAAEGVRKRGFSETQTETTTVDLKLNLSPKELSSADGTDPRNKPNTSPKEKTLLLPDPAKPPAKEQVVGWPPVRSFRKNMFAAQKNMGEESEKNSPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDALGKMFSSFTIGNCESQGFKDFMNESKLMDLLNSSDCVPTYEDRDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01826 253 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 240 IPR003311 GO:0005634|GO:0006355
Vian3g01826 253 SUPERFAMILY CAD & PB1 domains 129 234 - -
Vian3g01826 253 MobiDBLite consensus disorder prediction 49 79 - -
Vian3g01826 253 Coils Coil 249 253 - -
Vian3g01826 253 ProSiteProfiles PB1 domain profile. 135 235 IPR000270 GO:0005515
Vian3g01826 253 Pfam AUX/IAA family 15 244 IPR033389 -
Vian3g01826 253 Gene3D - 129 247 - -
Vian3g01826 253 FunFam Auxin-responsive protein 130 245 - -
Vian3g01826 253 MobiDBLite consensus disorder prediction 36 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01826 Vian-Chr3 21007013 21008928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01826 127 238 B3 DNA Binding Superfamily AT3G61830 33.929 5.38e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian3g01826 AUX_IAA 3.5e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01826 K14484 - gmx:100780214 398.282