Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01825 ATGGAGAATTCATTGGGAAGCTACGAAAAAGAGCTTAATCTGAAGGCCACTGAGCTGAGATTGGGGTTGCCCGGTAGCGATGAGCCTGAGAAACTTGCTACTGCTAGAAGCAACAAGAGATCTTCGCCGGAAGCAAGTGACAATGGTTCTGATGTCACAAAAGAAGACAACGTTGTACCACCTGCAAAGGCACAAGTAGTGGGGTGGCCACCGATTCGATCTTACAGGAAGAATAACGTACAGCAGAAGAAAGAAGAAGAAAGTGAAGGAAATGGGATGTACGTGAAAGTTAGCATGGCGGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAAAAGCTACCCTGAACTTCTCAAGGCCTTGGAAAATATGTTCAAGTGCATATTCGGAGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAAGATGGTGACTGGATGCTGCATGTTCGTGTCATCCTGCAAGAGGCTCAGAATCATGAAGGGATCAGAAGCAAAGGGGTTGTTGGGTTGTTTTTGAGCCGAAAATCAAAGCAGGAGCATGCATATCCATAG 585 0.4479 MENSLGSYEKELNLKATELRLGLPGSDEPEKLATARSNKRSSPEASDNGSDVTKEDNVVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLHVRVILQEAQNHEGIRSKGVVGLFLSRKSKQEHAYP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01825 194 Gene3D - 86 168 - -
Vian3g01825 194 ProSiteProfiles PB1 domain profile. 92 185 IPR000270 GO:0005515
Vian3g01825 194 MobiDBLite consensus disorder prediction 18 64 - -
Vian3g01825 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 159 IPR003311 GO:0005634|GO:0006355
Vian3g01825 194 Pfam AUX/IAA family 44 158 IPR033389 -
Vian3g01825 194 SUPERFAMILY CAD & PB1 domains 87 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01825 Vian-Chr3 20977981 20978854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01825 83 158 B3 DNA Binding Superfamily AT2G46530 35.526 4.81e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian3g01825 AUX_IAA 1.2e-36 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01825 K14484 - gmx:100780752 276.559