Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01819 ATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGTCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAGTGGTGGAAACTGGAGATGCTGTGGTAAAGTTCAAGAAGGTTGTGTCCTTGCTTAAGAGTGGTTTGGGTCATGCAAGAGTGAGGAAGGTTAAAAACCCTCAAGTTCCCTTTACCCACCAAAGTATCTTCTTAGACAACCCAAATTGCAAAACCAACAACCATCACTCAAAAAATCTGCAGCTTTTCCAACCCAGCTTTCCTGACAATTCAATTGTGGAACTGGGTTCAACCATTAAACATTCACTCTCTCTAGCACAGCCCTCTTTGGAATTGAGCTCCAGTGGGAAAAGTGCTCTTCACCTCACTCAGCAGGCTTCATCAACTCACTATCACTTCTTTCAGCAACAGCAACAGCAAAGGGTGTTGCTCCAGCAGCAACAGCAGCAGCAACAACAGCAGCAACATTTGAAGCATCAAGCAGAAATGATGTTCCGAAGGAGCAATAGTGGCATAAACCTGAATTTTGACAGTACTAGCTGCACACCAACAATGTCATCTAATAGGTCTTTTATTTCTTCCTTGAGCATAGACGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCACAAGAGAAAATGTTCTGCAAGAGGCGATGAAGGAAGCTTGAAATGTGGGAGTAGTTCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGATTGAAAAGGTCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATTCCCCCTGATGATTATTCATGGAGAAAGTATGGCCAAAAGCCCATCAAGGGCTCCCCTCACCCTAGGGGATACTATAAATGCAGCAGCATGAGAGGGTGTCCTGCTAGAAAGCATGTTGAGAGGTGCTTGGAAGAGCCGACCATGCTAATTGTCACCTATGAAGGCGAACATAACCACCCTAAGTTACCAACGCAATCTACAAATGCATGA 1065 0.4423 MEEVEQANRAAVESCHRVLSLLSQPRDQVQHRNLVVETGDAVVKFKKVVSLLKSGLGHARVRKVKNPQVPFTHQSIFLDNPNCKTNNHHSKNLQLFQPSFPDNSIVELGSTIKHSLSLAQPSLELSSSGKSALHLTQQASSTHYHFFQQQQQQRVLLQQQQQQQQQQQHLKHQAEMMFRRSNSGINLNFDSTSCTPTMSSNRSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSSRCHCSKKRKHRLKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSTNA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01819 354 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 353 IPR044810 GO:0003700
Vian3g01819 354 MobiDBLite consensus disorder prediction 227 256 - -
Vian3g01819 354 Coils Coil 147 167 - -
Vian3g01819 354 Gene3D WRKY domain 271 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01819 354 Pfam WRKY DNA -binding domain 288 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01819 354 Pfam Plant zinc cluster domain 239 284 IPR018872 -
Vian3g01819 354 SUPERFAMILY WRKY DNA-binding domain 284 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian3g01819 354 ProSiteProfiles WRKY domain profile. 281 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01819 354 SMART WRKY_cls 286 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian3g01819 354 FunFam WRKY transcription factor 65 270 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01819 Vian-Chr3 20893899 20895600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01819 1 351 WRKY Transcription Factor Family AT2G30590 57.441 8.43e-124 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian3g01819 WRKY 5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01819 - - gmx:100170681 592.038