Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01815 ATGACAGACATATTTGAAAACCAACCATCACCTGATTCTTCAAATTATGCATCAAGCAGTGGCTTCTGTGTGGAAGACAAGGAGATTGGATATGGAGCTGCAACATCAAAACATATATATCTTTTGGCCAACAAATCTGTTCTCCACTTCTTTTCCATCAAAATTGACCTGAATTATGCTCGCATGGTAATGGCAGAGTTGGTGGGTACTTTTATTTTGATGTTCTGTGTATGTGGAATCAGTGGAAGCACAGAAATCCAAAAGGGTGCAGTGGGCCTTGCGGAGTATGCAGCTACAGCAGGGTTAACAGTGGTGGTGGTAATTTTCTCTATAGGGCCAATATCTTGTGCGCACGTTAACCCAGCTGTCACAATAGCCTTTGCTACAATGGGTCAATTTCCATGGTTGAAGGTTCCAGTTTACATAATAGCACAGACAGTAGGTTCTATGTCGGCAACATACATAGGTAGCCTTGTATACGGCATAAAATCAGATGCTATCATGACCATGCCACTCCAAGGGTGCACCTCTGCCTTCTGGGTGGAGCTTATTGCAACTTTCATCATCATGTTCCTCGTTGCAGCTTTGACATCTGAATCTCAATCAGTGGGCCATTTATCTGGCTTTGTTGCTGGTGTAGGAATTGGCCTTGGTGTGCTAATCACAGGACCAGTCTCAGGTGGATCAATGAATCCTGCAAGATCGTTAGGTCCGGCAATTCTGTCATGGAAGTTTAAGAACATATGGATATACATGGTAGCCCCGAGTGGTGGAGCTGTGGCAGGAGCTGCAATGTTTCGCTTCCTACGCATTCGAAACCAACATTCTACTACGTTGTTCTCCCCAAACATCAGTGACGCTGGTCGTCCCATACCCTTTTGCTCAAGTTAG 891 0.4467 MTDIFENQPSPDSSNYASSSGFCVEDKEIGYGAATSKHIYLLANKSVLHFFSIKIDLNYARMVMAELVGTFILMFCVCGISGSTEIQKGAVGLAEYAATAGLTVVVVIFSIGPISCAHVNPAVTIAFATMGQFPWLKVPVYIIAQTVGSMSATYIGSLVYGIKSDAIMTMPLQGCTSAFWVELIATFIIMFLVAALTSESQSVGHLSGFVAGVGIGLGVLITGPVSGGSMNPARSLGPAILSWKFKNIWIYMVAPSGGAVAGAAMFRFLRIRNQHSTTLFSPNISDAGRPIPFCSS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01815 296 Pfam Major intrinsic protein 59 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01815 296 PANTHER AQUAPORIN NIP2-1 54 275 IPR034294 -
Vian3g01815 296 PRINTS Major intrinsic protein family signature 137 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01815 296 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01815 296 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01815 296 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01815 296 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01815 296 PRINTS Major intrinsic protein family signature 100 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian3g01815 296 SUPERFAMILY Aquaporin-like 57 276 IPR023271 -
Vian3g01815 296 ProSitePatterns MIP family signature. 118 126 IPR022357 -
Vian3g01815 296 Gene3D Glycerol uptake facilitator protein. 44 279 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01815 Vian-Chr3 20773956 20775557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01815 56 291 Major Intrinsic Protein MIP AT4G10380 38.983 2.93e-52 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01815 K09874 - gmx:100817660 405.216