Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01809 ATGCTGAATTTGTTTGTTCCTGGTAAACATTTTTCATTGGGTTTGCGACTTACTAAGCTGGAGCTCAAGACTAAGTTGTGCCAGCTTGTTGATGGTTCCAAGTGGAACTATGCAGTGTTCTGGCAAGTTGCTGGCTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGTGACGGGCATTGCAGTGATCCCAAAGGGAAGAGGAGTTCAATGGGGAAGGACGATGAGCAGGAGGTGAGAAAGATGGTGCTGCAGAAGCTTGATGCCTGTTTTGGTGGGTCTGTGTCGAAAGAGGCTAATTATGCAAGACTGGATAGGTTGTCTGATTTGCTCATGTTTTACTTATCCTCAATGTGTTACATATTCGGTTTTGATTCACCATGTGGTCCTGGGAGTTCATTCAAATCTGGTAAATGGATTTGGACATCTGATGCTGCCGCTTGTTTGAATCAATTAGAATCTAGATCATTTCTAGGGAAAGTGGCTGGTCTTCAAACTGTTGTTTTTGTTCCTCTAAAATCTGGGGTGGTGGAGCTTGGTTCGAATGAAGTGGTGTCTGAAGAACAGGGTTTTGTGGAGATGGTGAAGACAGCATTTGGGGAATCCAGTCCCGGGCAGACTAAGGTGTTTCCGAAGATTTTTGGGCACGAGTTAAGCCTGGGGGATACAAAATCTCAGTCTATAACCATTAGTTTCTCCCCAAAGGTGGAAGATGATCCTGGTTTTACTTCAGACTCTTTTGAAGTTCAAGCACTGGGGTTGAACCATGCGTATGGAAATTCATCCAATGGAACTTTGGGGGACAGTAGTGAAGGGAAGATGTTCCCTCAATTGAATCAAATGATGGGTGGGAATTTTAATGCCCAAGCAAGGGTTCCTTGTCTAGATCTTGGTAATGAAGACACGTCCTCAATTCATGCAGATGAGCGGAAGCCCAGAAAAAGAGGTAGAAAACCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGACAGAGACGTGAGAAGCTTAACCAGAGGTTTTATGCCTTAAGAGCTGTTGTCCCCAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTCATCACTGATCTCCAGATGAAGATCAAAGTGTTGGAAGCTGAGAAGAACATGATTAACAACAAGGACCAGAAGCTATCCTTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTGAGATGCCCTTTGGATACTCACCCTGTTTCTGATGTAGTTAAAACTTTCAGGGAGCATCAAATTGTGGCTCAAGACACCAATGTTTCTACTACAGATGATAAAATCATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCCATACAGTTGAAAGAAAAGCTTGAAGCGGCCCTATCCAAAAATTGA 1428 0.4384 MLNLFVPGKHFSLGLRLTKLELKTKLCQLVDGSKWNYAVFWQVAGLKSGGSALIWGDGHCSDPKGKRSSMGKDDEQEVRKMVLQKLDACFGGSVSKEANYARLDRLSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKWIWTSDAAACLNQLESRSFLGKVAGLQTVVFVPLKSGVVELGSNEVVSEEQGFVEMVKTAFGESSPGQTKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSFEVQALGLNHAYGNSSNGTLGDSSEGKMFPQLNQMMGGNFNAQARVPCLDLGNEDTSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQKLSLPDMDFQEREDDTVVTVRCPLDTHPVSDVVKTFREHQIVAQDTNVSTTDDKIIHTFSIRTEGGEAAAIQLKEKLEAALSKN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01809 475 FunFam Transcription factor bHLH13 316 390 - -
Vian3g01809 475 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Vian3g01809 475 CDD ACT_UUR-ACR-like 407 474 - -
Vian3g01809 475 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 391 IPR036638 GO:0046983
Vian3g01809 475 MobiDBLite consensus disorder prediction 297 329 - -
Vian3g01809 475 Pfam Helix-loop-helix DNA-binding domain 327 373 IPR011598 GO:0046983
Vian3g01809 475 PANTHER MYC 19 471 IPR045084 GO:0003700|GO:0006355
Vian3g01809 475 Gene3D - 316 389 IPR036638 GO:0046983
Vian3g01809 475 Coils Coil 369 389 - -
Vian3g01809 475 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 22 198 IPR025610 -
Vian3g01809 475 CDD bHLH_AtAIB_like 320 398 - -
Vian3g01809 475 SMART finulus 329 378 IPR011598 GO:0046983
Vian3g01809 475 MobiDBLite consensus disorder prediction 301 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01809 Vian-Chr3 20680628 20682445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01809 22 474 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.930 2.19e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g01809 bHLH-MYC_N 2.8e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01809 - - gmx:100819968 829.706