Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01803 ATGGCGATTTTGCAGGGCCTTCAGACATTTCTGCTCTCACAAACCTTCATCACTATCACTTTTCCATTCGCGCTAGGCAAACTCCAAAGCAATTATTCTCTTCGCTTCTATTCTCATTCCGATCTCTCTTGCACGTTCAAAACCACAGCTCCCTCGCGTTCAACTTTGATCCATGATTTCTCTTCCACGCCGTTGGAAAATGTCCGCACGTGTTTTTCTTGGCCGGGGATTCCGGAAAATATTGTTGTTGGTTCTCATGTTTGGGTTGGAGATCCAGAAGTAATTTGGATTGCTGGCCAGGTACTGAGTATCAATGGAGAAGATGCTGAAATTCAGATTAGTGATGAGAGGAAGGTTGTTTCCCATTTGTCAAAATTATATCCAAAGGATATCGATGCACCAGCTGATGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGCTGTGCTGCATAATTTGGAAACTAGATATGCGATGAATGAAATATATACTTATACCGGAAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACATCTCTATGATACTAATGTGATGCAAAGATACAAGGGATCAATGGTTGGAGATTTGAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGCATCCTGATTTCATTTAGGGAAAAGGAGAAATATAAGTTGGGAGATCCTAAATCATTTCACTACCTTAACCAATCCAATTGCTACGAATTAGTTGGTGTTAATGCTGCTCAAGAATATCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGACGAGCAGGATGCTATTTTCAGAGTTGTAGCTGGTATTCTTCATCTTGGAAATATTAACTTTTCAAAATCAGAAGAAACTGATTTTGCAGTTCTAGAAGAAGAAGAATCCAAGTTTCATCTACAAACAACAGCAGAACTTCTTATGTATTGCTGA 960 0.399 MAILQGLQTFLLSQTFITITFPFALGKLQSNYSLRFYSHSDLSCTFKTTAPSRSTLIHDFSSTPLENVRTCFSWPGIPENIVVGSHVWVGDPEVIWIAGQVLSINGEDAEIQISDERKVVSHLSKLYPKDIDAPADGVDDMTKLAYLHEPAVLHNLETRYAMNEIYTYTGNILIAINPFQSLSHLYDTNVMQRYKGSMVGDLSPHVFAIAEAAYSILISFREKEKYKLGDPKSFHYLNQSNCYELVGVNAAQEYLSTKRAMDIVGISQDEQDAIFRVVAGILHLGNINFSKSEETDFAVLEEEESKFHLQTTAELLMYC 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01803 319 PANTHER MYOSIN 130 219 - -
Vian3g01803 319 Gene3D Myosin VI head, motor domain, U50 subdomain 265 318 - -
Vian3g01803 319 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 82 131 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vian3g01803 319 Gene3D Kinesin motor domain 105 218 IPR036961 -
Vian3g01803 319 Pfam Myosin head (motor domain) 138 219 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01803 319 Pfam Myosin head (motor domain) 221 316 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01803 319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 316 IPR027417 -
Vian3g01803 319 SMART MYSc_2a 130 319 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01803 319 ProSiteProfiles Myosin motor domain profile. 136 319 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01803 319 Pfam Myosin N-terminal SH3-like domain 84 120 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vian3g01803 319 Gene3D - 219 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01803 Vian-Chr3 20580519 20592917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01803 222 317 Myosins gene family AT1G08730 68.750 3.74e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01803 K10357 - pvu:PHAVU_007G1957000 259.996