Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01801 ATGATTCAGGGGATTCCGGAAAATATTGTTGTTGGTTCTCATGTTTGGGTTGGAGATCCAGAAGTAATTTGGATTGCTGGCCAGGTACTGAGTATCAATGGAGAAGATGCTGAAATTCAGATTAGTGATGAGAGGAAGGTTGTTTCCCATTTGTCAAAATTATATCCAAAGGATATCGATGCACCAGCTGATGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGCTGTGCTGCATAATTTGGAAACTAGATATGCGATGAATGAAATATATACTTATACCGGAAATATTCTCATTGCAATCAATCCCTTCCAAAGTCTTTCACATCTCTATGATACTAATGTGATGCAAAGATACAAGGGATCAATGGTTGGAGATTTGAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGAAATGATGAATGAGGTGAAAAGCAATTCTATTCTTGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATATTTAGGTGGTCACACTGCATCAGAAGGCCGAACAGTTGAAAAACAAGTACTAGAGTCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTTGGAAAATTTGTTGAGATCCAATTTGATAAGTTTGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTCTGCGCTTCTCCTCCAGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAAATCATTTCACTACCTTAACCAATCCAATTGCTACGAATTAGTTGGTGTTAATGCTGCTCAAGAATATCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGACGAGCAGGATGCTATTTTCAGAGTTGTAGCTGGTATTCTTCATCTTGGAAATATTAACTTTTCAAAATCAGAAGAAACTGATTTTGCAGTTCTAGAAGAAGAAGAATCCAAGTTTCATCTACAAACAACAGCAGAACTTCTTATGTGTGATGTGCATGCTTTGGAAGATGCACTGTGTAAGCGTATGATGGTTACTCCAGAAGAAATCATCAAAAGAAGTCTTGACCCTCTGGGTGCCACAGTTAGCCGGGATGGTTTAGCCAAAACCATATATTCTCGTTTATTTGACTGGTTAGTTCAAAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAGTGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTCCAAACAAATAGCTTTGAGCAGTTTTGTATAAATTTCACAAATGAAAAGCTACAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAGGAGGAATATACAAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCTGGTGGAATTATTGCTCTGCTTGATGAAGCTTGTATGTTTCCTAAGTCAACTCATGAAACATTTTCACAGAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATTAAGCCAAAATTGACACGTTCAGACTTCACTGTTTGTCATTATGCAGGAGATGTTCAGTATCAATCTGAGCACTTTTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGAGATGCTAAGTGCTTCCAAATGTTCATTTGTATCAGGTCTTTTCCCCCCACTTTCTGAGGAGTCAGCCAAATCTTCTAAGTTTTCTTCCATTGGTTCTCGTTTCAAGCTACAATTACAACAATTGATGGATACACTCAATCTGACAGAGCCACACTATATTAGATGCGTGAAGCCAAATACACAACTAAAACCTTTCATATTTGAACATATGAACGTCATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGCGCTGGATTTCCCACTCACTGGACCTTTCATGATTTTATTACTCGATTATGGATTCTTGCTCCGGAGATTCTTCGTGGGAACTTTGATGAAAAAGATTCGTGTAAAAAGATTTTGGAGAAGATTGGGCTGACAGGTTATCAGATAGGGGAAACAAAAATATTCTTAAGAGTTGGTCAGATGTCTGAATTGGATGCTCGAAGGGCATTCCTGCTTAGTAGTTCAGCTACTGTTATTCAAAAGAATGCTAAAACTCGTTGTAGTCGGAAAACATATATTGATTTGCGAAAGAGCTCTGTTTTCCTACAATCCATTTGCAGAGGAGAATTGGCTCGAAGATTGTATTATCACATGAAATATAGGCAAGTTGCTGCAGTCAGAATTCAAAAGCAGATGCGACGAACACTAGCTAGGAAGCAGTATGTTGAAATAAAGTTCTGTGCAAATGTGTTGCAGACAGGTTTTCGAGCAATGGCTGCTTGTAATCAATTTAGATATAAAAAGCAAGCATATAGAAAGCAGACTAGTGCATCAATAACTATTCAGTCCTATTGGCGTCGACATAAAGCTCTCGTTGACTATCAGAACCTTAAGAAAGCACCAATCATTCAACAAAGCAGCAGCTCCTGTGATACACAGGAAGAGAAGGTTTCAGAGACTCCTCTGCAAAATGAAAGTCCTTCTATGGAAGAATCTTCATATCCCGTGCATGAAGAATCCTCAAATCCTGTGCAAGAAGACGAAAGTATTGAAGCTATCAGGGATTCTTCTAGTCCTCTCAAAGACACTGACAAGATTGAGGTTCTTGCTGTAGAAATAAAAAACTTAAAGGTCAAGTTGCATGCAGAAAAACAAAGAGGTGATGAATATGAAAGGAAATATGCAGAAGCTCAAGGATCCAATGAAGAGTTACGCAAAATATTAGCAGAAACTGAAAAAAGAGTACATCAGATTCAGGACACTTGGAACAGGATGATATCTTCCATGTCAAATCAAGTTGCCGCCGATCTGAAGACGATCTTGAGTACTTCGTCAAGATTGAGTTCAAATTTTCGACCTATAGCTAGGGTTGACGTTGCTTCTAGTAACTCTGATACTTCGTCTACAGACTCTGATTTCACATTTCCAGCTACTGCTTCAAATCCAGAACCTCACGAGTCAAATTCTTTCCCGCTAGTAGTTCAGGATGTCACTGCAGGGGATGGATCGGGTTAG 3210 0.3891 MIQGIPENIVVGSHVWVGDPEVIWIAGQVLSINGEDAEIQISDERKVVSHLSKLYPKDIDAPADGVDDMTKLAYLHEPAVLHNLETRYAMNEIYTYTGNILIAINPFQSLSHLYDTNVMQRYKGSMVGDLSPHVFAIAEAAYREMMNEVKSNSILVSGESGAGKTETTKMLMQYLAYLGGHTASEGRTVEKQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKFGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPKSFHYLNQSNCYELVGVNAAQEYLSTKRAMDIVGISQDEQDAIFRVVAGILHLGNINFSKSEETDFAVLEEEESKFHLQTTAELLMCDVHALEDALCKRMMVTPEEIIKRSLDPLGATVSRDGLAKTIYSRLFDWLVQKINISIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLTRSDFTVCHYAGDVQYQSEHFLDKNKDYVVPEHQEMLSASKCSFVSGLFPPLSEESAKSSKFSSIGSRFKLQLQQLMDTLNLTEPHYIRCVKPNTQLKPFIFEHMNVIQQLRSGGVLEAVRIKCAGFPTHWTFHDFITRLWILAPEILRGNFDEKDSCKKILEKIGLTGYQIGETKIFLRVGQMSELDARRAFLLSSSATVIQKNAKTRCSRKTYIDLRKSSVFLQSICRGELARRLYYHMKYRQVAAVRIQKQMRRTLARKQYVEIKFCANVLQTGFRAMAACNQFRYKKQAYRKQTSASITIQSYWRRHKALVDYQNLKKAPIIQQSSSSCDTQEEKVSETPLQNESPSMEESSYPVHEESSNPVQEDESIEAIRDSSSPLKDTDKIEVLAVEIKNLKVKLHAEKQRGDEYERKYAEAQGSNEELRKILAETEKRVHQIQDTWNRMISSMSNQVAADLKTILSTSSRLSSNFRPIARVDVASSNSDTSSTDSDFTFPATASNPEPHESNSFPLVVQDVTAGDGSG 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01801 1069 Coils Coil 931 986 - -
Vian3g01801 1069 Gene3D Kinesin motor domain 67 664 IPR036961 -
Vian3g01801 1069 CDD MYSc_Myo11 78 722 IPR036018 -
Vian3g01801 1069 FunFam Class V myosin 441 584 - -
Vian3g01801 1069 MobiDBLite consensus disorder prediction 870 905 - -
Vian3g01801 1069 MobiDBLite consensus disorder prediction 1025 1059 - -
Vian3g01801 1069 MobiDBLite consensus disorder prediction 1025 1069 - -
Vian3g01801 1069 Gene3D Myosin VI head, motor domain, U50 subdomain 314 603 - -
Vian3g01801 1069 Gene3D - 669 735 - -
Vian3g01801 1069 Gene3D - 788 837 - -
Vian3g01801 1069 Gene3D - 737 787 - -
Vian3g01801 1069 FunFam Myosin 2 314 428 - -
Vian3g01801 1069 Gene3D - 441 625 - -
Vian3g01801 1069 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Vian3g01801 1069 FunFam Myosin heavy chain 254 309 - -
Vian3g01801 1069 ProSiteProfiles IQ motif profile. 839 865 IPR000048 GO:0005515
Vian3g01801 1069 Gene3D - 254 312 - -
Vian3g01801 1069 SMART MYSc_2a 58 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01801 1069 MobiDBLite consensus disorder prediction 870 923 - -
Vian3g01801 1069 MobiDBLite consensus disorder prediction 906 923 - -
Vian3g01801 1069 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01801 1069 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01801 1069 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01801 1069 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01801 1069 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01801 1069 Pfam Myosin N-terminal SH3-like domain 12 47 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vian3g01801 1069 ProSiteProfiles IQ motif profile. 786 810 IPR000048 GO:0005515
Vian3g01801 1069 PANTHER MYOSIN 786 1009 - -
Vian3g01801 1069 SMART iq_5 759 781 IPR000048 GO:0005515
Vian3g01801 1069 SMART iq_5 838 860 IPR000048 GO:0005515
Vian3g01801 1069 SMART iq_5 736 758 IPR000048 GO:0005515
Vian3g01801 1069 SMART iq_5 785 807 IPR000048 GO:0005515
Vian3g01801 1069 Pfam IQ calmodulin-binding motif 841 856 IPR000048 GO:0005515
Vian3g01801 1069 Pfam IQ calmodulin-binding motif 789 806 IPR000048 GO:0005515
Vian3g01801 1069 Pfam IQ calmodulin-binding motif 761 780 IPR000048 GO:0005515
Vian3g01801 1069 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 10 59 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vian3g01801 1069 ProSiteProfiles Myosin motor domain profile. 64 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian3g01801 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 785 IPR027417 -
Vian3g01801 1069 Pfam Myosin head (motor domain) 66 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01801 Vian-Chr3 20543316 20566699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01801 4 996 Myosins gene family AT1G54560 63.037 0.0 1375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01801 K10357 - gmx:100803485 1804.65