Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01800 ATGGAAGGAAACTATCTGAACAGAAATAGTACTACTACTCCACAGAGAGAAGATAGCTTTGGCTTTGAGGAGCATACATGGGGAAATTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGGGGACACATGAATGTTCACAGAAGGGATAGGGCTAGATTGAGATCATCCTTGTCTTCATGGGTTTCTGAATGCCCTAAACCTAACCCTAGCACTAAACCTAATAACCCAACTCTTCTTCCAACATCTTCTTCACCATCTCCTTTATCTGATCAGTCTTTGAACTGTCCACATCCTTCTCCACTTTGCACTCCTTGTCTCACTTTGTCTTCTGCACCACCCTTCCCAGGTTCTACCAGTGGAGACAAGAAACCAAGACTCACACCTTCTCATTCTCAGTCTCCTCTTTTGAGTCCTCAAAGCTGCGAAATTAAGATGATGTTGATGACAAGTAGCAACACAAGGAATGATGAGGAAATGAAGGGCTGTGTGGAGGAGGAGGAGGAGCACAAGGGTTTCAAGGACAATGAGCAAAACATTACTTTGGAATTAGGAATAGGGTTGATTAAACACCAAGAGGAGAAGTTAGACTTGGAGCTTCGACTTGGGCATTTCTAG 651 0.4378 MEGNYLNRNSTTTPQREDSFGFEEHTWGNSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNNPTLLPTSSSPSPLSDQSLNCPHPSPLCTPCLTLSSAPPFPGSTSGDKKPRLTPSHSQSPLLSPQSCEIKMMLMTSSNTRNDEEMKGCVEEEEEHKGFKDNEQNITLELGIGLIKHQEEKLDLELRLGHF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01800 216 SMART c2h2final6 36 58 IPR013087 -
Vian3g01800 216 Pfam C2H2-type zinc finger 36 60 - -
Vian3g01800 216 Gene3D Classic Zinc Finger 24 80 - -
Vian3g01800 216 MobiDBLite consensus disorder prediction 1 17 - -
Vian3g01800 216 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Vian3g01800 216 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Vian3g01800 216 MobiDBLite consensus disorder prediction 87 105 - -
Vian3g01800 216 PANTHER OS07G0101800 PROTEIN 15 215 - -
Vian3g01800 216 MobiDBLite consensus disorder prediction 125 151 - -
Vian3g01800 216 MobiDBLite consensus disorder prediction 70 105 - -
Vian3g01800 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vian3g01800 216 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01800 Vian-Chr3 20523468 20524118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01800 24 214 C2H2 Transcription Factor Family AT3G23130 39.175 5.09e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g01800 zf-C2H2_6 5.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01800 - - gmx:102660985 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g01800 3 20523468 20524118 Vian3g01800 3 20523468 20524118 ECH