Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01794 ATGGCTTCTGCAACAACTGCAAACGACACTGCTTCTGCTTCTTCTTCTTCTTCCTTTGGATCTCCCTGTGGGGCATGCAAGTTCCTGCGAAGAAAATGTGCCGCAGACTGCATCTTTGCACCCTACTTTTGCTCCGAACAAGGAGCTGCTAGATTCGCAACCATTCATAAGGTTTTCGGGGCTAGCAACGTTTCCAAGTTGCTCTTGCGTATACCAGAAAACGATCGTTTTGAGGCAATGCTGACAATCGCTTACGAAGCCCAAGCTCGCATCAGAGACCCTGTTTACGGTTGTGTCTCCCATATATTCGCCTTGCAACAACAGGTAGCAAGCTTGCAGGCACAACTAGTGGAAATGAAGGCACTGCTGGATCAGAACCAGATGGTTTACAGAAACATGGAGAATCATTGGTCAGAGAATGTTGGACAAGCATTCAATCCGTTTCGTCCCACTTCCATGAATAACCCTATTTCTCCTCAGAGCTCACTTGACTCAATTGATTACAGCAGCAATATAAATGATGGAATGAGCATGCAAGATGCACAAAACGGAGATGATTTCTCATTCCAAGCTTGTTCTTGGAAAAGATCACACAGCAATGACTTGGGTGAGCTACAAGAATTGGCACTCAGAATAATGAGAAAGTGTGATTAG 654 0.4511 MASATTANDTASASSSSSFGSPCGACKFLRRKCAADCIFAPYFCSEQGAARFATIHKVFGASNVSKLLLRIPENDRFEAMLTIAYEAQARIRDPVYGCVSHIFALQQQVASLQAQLVEMKALLDQNQMVYRNMENHWSENVGQAFNPFRPTSMNNPISPQSSLDSIDYSSNINDGMSMQDAQNGDDFSFQACSWKRSHSNDLGELQELALRIMRKCD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01794 217 ProSiteProfiles LOB domain profile. 21 123 IPR004883 -
Vian3g01794 217 MobiDBLite consensus disorder prediction 1 21 - -
Vian3g01794 217 Coils Coil 102 122 - -
Vian3g01794 217 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 174 - -
Vian3g01794 217 Pfam Lateral organ boundaries (LOB) domain 22 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01794 Vian-Chr3 20382941 20383776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01794 4 214 AS2 family AT2G42430 48.425 2.95e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian3g01794 LOB 3.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01794 K13944 - gmx:100776145 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02187 2 41818415 41819879 Vian3g01794 3 20382941 20383776 PCT