Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01791 ATGGAATTCAGCTGCCCAGAAGATTCCAAAACCTCCAGCGACGAAATCGATCGCTCAGCAGCGGAGCAGAATGATGACATGGGCACTGGCAGATCCTACGAGTGTGTCTTTTGTAAGAGAGGCTTCACCACTGCACAGGCTTTGGGTGGACACATGAACATACACAGAAAAGATAGGGCCAACAGGACCAAACCTTCCACTTCAACCAAGCTTGATGACACCAATACCTATGCAGATCTCGGGTTATACTCGGCCTCAAATCCCAGCTATCTTTCAAGAGGGACTTACTATTCCACTCTTCCTGATTCAGAGGTAGACCTCAATTACAACTACTACCATCACTTATATTTTCCCTCACACGCTTCTGCTGCCAAATCACCTTCACATGTACAATACAGTGAGGTTTTCTGTGTTGAGAACCAAAGGGATCCTCACCTTCTGTTTGGACAAGATTGGAGACAAAAGGGTTTGACTTTCTACACCAATCCCTTATGTGTACATGGAAATAAAGACAAGATAGAAAACAACACTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCTTAA 579 0.4473 MEFSCPEDSKTSSDEIDRSAAEQNDDMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANRTKPSTSTKLDDTNTYADLGLYSASNPSYLSRGTYYSTLPDSEVDLNYNYYHHLYFPSHASAAKSPSHVQYSEVFCVENQRDPHLLFGQDWRQKGLTFYTNPLCVHGNKDKIENNTEEDDLDLELRLGHHP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01791 192 Pfam C2H2-type zinc finger 33 57 - -
Vian3g01791 192 Gene3D Classic Zinc Finger 9 84 - -
Vian3g01791 192 MobiDBLite consensus disorder prediction 1 26 - -
Vian3g01791 192 SUPERFAMILY beta-beta-alpha zinc fingers 31 59 IPR036236 -
Vian3g01791 192 MobiDBLite consensus disorder prediction 7 24 - -
Vian3g01791 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Vian3g01791 192 PANTHER OS07G0101800 PROTEIN 9 191 - -
Vian3g01791 192 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01791 Vian-Chr3 20350623 20351201 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01791 33 122 C2H2 Transcription Factor Family AT5G43540 40.625 1.19e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian3g01791 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01791 - - ccaj:109812060 281.567