Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01788 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGACGATGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCAATGCAAAACGACGAGATCATGGAACTGTTGTGGCAAAACGGCCAGGTTGTGATGCACAGCCAAAACCATCGACCACTCAGAAAACCGCCGCATACGTTGGTTGCCGGCGGAGTCTCTCCGGCTAGGGATATTCGATCCTCTGAAGCAGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCACGAAGATCCTCCTCCCTTTGATCACCACGATTTCAGCGCCGACATGCTGAACCCGCCGCCGACAAACGAAATCGCGAGCGTGACTCACAATAGCGCCGCCATACAATCCTCCTTTCGCACGACGGAGCTTCGACATCCTGCTCCTCGTCCGCCGATTCCTCCTTCTCGGCGGCCGGTGCCGGCGGCAAACAGGATGCAGAATTTCTCACACTTCTCGAATCACGGCAATTCATCGTCGAGTTCCAAGGCCACGGCGGCACAACCGACGGTGGTGGATTCGTGCGAGACGCCGGTCGCGACGGCAGAGCACGCTGAAACCGGTCGCGCTAGCGTGACCGCCGCCGATGCAGGTAAGGTGGCGGAGTCTGGACGAAGGGAGACGGCGACGTGCGATGTGACGGTGACGTCGTCTCCTGGTGGTTCAAGCGGGAGCGCGGAACCAGTTCAGAGGGAACTTGACCGAAAGAGGAAGGGGAGAGAACCGGAGGAATCAGAGTTTCTGAGCGAGGTGTTACTTAAACATGAACTTTTTGATATTGATGATGAATTGTCTTGTAATATCTCTCACGAGGAGACTCATAATTATGGTTTTTCCAGAGTATATTCCGAGGTAAAGTGCCTAGGACTAAAAGATGACTTGGACATGGTTGTGAAGTTTGATGGGGGCAGCAAAATAGATTTTGAATCTCCGGAAGCTAAAAAACAAGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGTAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATTTGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAACTAGTTCAACTTTGCCAGCAGCAACTCCAGCTGCTCATTTGGGACCGAGGTTTCCCCCTGTGCCTCCTTTCCATATTCCCCATGTTCCTGCCCCTGATTCATCCAGAATGCCAGCACCAAATCTGTCAGATAATAGTATGCTTAACGCACTCGGTACCCAAGGTCCAGATCAATCACGTATCCCAAACTACACTGATCCTTATCAGCAATACGTCGGCCTCCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTGAGCAAGCCCAGTACCAGTAGGGGTCAAGAGAATCCAGAAAAACATCAGTCAGAGTTGACAATTCAATTGTGCTGCTTACTGTTGGATCGCTGGCACAAGGTTAAGCTTCACCGGCTCTATACAAAAGCAGCCAAGTGGTGTTTTAGAGAGAGCTAA 1770 0.4932 MNHCVPDFEIQMDDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMHSQNHRPLRKPPHTLVAGGVSPARDIRSSEAENYGNQHLFMQEDEMASWLHYPIHEDPPPFDHHDFSADMLNPPPTNEIASVTHNSAAIQSSFRTTELRHPAPRPPIPPSRRPVPAANRMQNFSHFSNHGNSSSSSKATAAQPTVVDSCETPVATAEHAETGRASVTAADAGKVAESGRRETATCDVTVTSSPGGSSGSAEPVQRELDRKRKGREPEESEFLSEVLLKHELFDIDDELSCNISHEETHNYGFSRVYSEVKCLGLKDDLDMVVKFDGGSKIDFESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYLPPMGMGIGMGMGMEMGMNRPVMPFPNMLTSSTLPAATPAAHLGPRFPPVPPFHIPHVPAPDSSRMPAPNLSDNSMLNALGTQGPDQSRIPNYTDPYQQYVGLQQVQLQLMQAMNQPNVSKPSTSRGQENPEKHQSELTIQLCCLLLDRWHKVKLHRLYTKAAKWCFRES 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01788 589 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Vian3g01788 589 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 424 IPR036638 GO:0046983
Vian3g01788 589 MobiDBLite consensus disorder prediction 139 265 - -
Vian3g01788 589 SMART finulus 352 401 IPR011598 GO:0046983
Vian3g01788 589 MobiDBLite consensus disorder prediction 327 355 - -
Vian3g01788 589 MobiDBLite consensus disorder prediction 478 508 - -
Vian3g01788 589 MobiDBLite consensus disorder prediction 228 244 - -
Vian3g01788 589 CDD bHLH_AtPIF_like 346 409 IPR047265 -
Vian3g01788 589 MobiDBLite consensus disorder prediction 165 194 - -
Vian3g01788 589 FunFam Basic helix-loop-helix transcription factor 341 404 - -
Vian3g01788 589 Gene3D - 341 404 IPR036638 GO:0046983
Vian3g01788 589 MobiDBLite consensus disorder prediction 486 508 - -
Vian3g01788 589 Coils Coil 352 372 - -
Vian3g01788 589 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 34 542 IPR031066 -
Vian3g01788 589 Pfam Helix-loop-helix DNA-binding domain 350 396 IPR011598 GO:0046983
Vian3g01788 589 MobiDBLite consensus disorder prediction 248 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01788 Vian-Chr3 20297965 20303196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01788 1 401 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 34.272 5.67e-50 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian3g01788 HLH 7.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01788 - - gmx:100788491 655.595