Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian3g01772 | ATGGCATACCAAGAGTTTTCTGCAATCCAAGGGGGGTACAACAGGGATTCCACTGTATCTTTCGAGCTTTTCACTGGAGCTGTAGCGCAGCGAGCTAGATCCAGAACTTCCGCGAGATTTTCGATCCGATCAATCAACAGCAAATGGGGTCCTATTATAGTGGATGGTGTTTTTTGCTATTTGACTAAGTTGTTAGAAGCAACAGGGAGTTCAAATTTGCGCCACATCGTTTCAGAAGCTTATTGCTCTGAACTAGTCCATGAATTGCTAACTGATGTGGATTCTGTTTTTACTCATTTCTTCTCTGACATTATGGTTACCAAAGTGGACTTAGGTTCCCATGAGTGCCCAATGCATACCTGCCATGCATACTCGGCTGCCACTGCCAATCCTGTGGTAGGTTCCCATGTTTGGGTGGAAGATTCTCAAGAAGCCTGGATAGATGGTGAGGTCTTGGAGGTTAAGGGAGGAGAAATCAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAACCTTCTAGTGTTTACCACAAAGATACTGAAGCCCCACCATGTGGAGTGGATGATATGACAAAACTTGCTTATCTACATGAACCTGGTGTCCTGGATAATCTGAGATCAAGATATGATATCAATGAAATTTATACTTACACCGGGAATATATTGATTGCTGTGAATCCTTTCATAAGGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAGGGAGCAGGTTTTGGTGAGCTAAGTCCACATCCTTTTGCTGTTGCAGATGCAGCTTATAGACTTATGATTAATGAGGGAATCAGTCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGGAAAACAGAAAGCACCAAGTTACTCATGCGCTATCTTGCTTACATGGGAGGGAGGACCAATAATGCTGCCGAAGGTAGAACAGTTGAGCAGAAAGTTCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGATATTCAGAAGTTCAAATTAGGAAATCCTAGAGAATTTCATTATCTGAATCAAACAAATTGCTTTGAGTTGGAAGGGGTTGATGAGTCAAAAGAATATCGTGATACTAGGAGGGCAATGGACGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTCGAGTGGTTGCTGCAATTTTGCATCTTGGCAACATTGAATTTGCAAAAGGAACAGAAATGGACTCAAGTGTGCCCAAAGATGAAAAATCTTGGTTCCATCTACATACTGCTGCCGAACTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAGCGTGTAATTGTTACTCGTGATGAAACTATAACAAAATGGCTAGATCCAGAATCTGCTGCACTCAGCCGTGATGCTTTGGCTAAGATTGTGTACACGAGGTTGTTTGATTGGCTGGTAGATAAAATTAATAATTCTATTGGACAAGACCCTGATTCGACATCCTTAATCGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGCATCAATTTGACCAATGAAAAACTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAGATTGATTGGAGTTACATTGAGTTTGTTGATAATCAAGATATTCTAGATCTCATTGAAAAGAAACCTGGAGGCATTATTGCTCTTCTTGATGAGGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTGCCCAAAAGCTGTATCAGACATTCAAAAACCACAAAAGGTTCAGCAAGCCCAAATTGTCACGTAGTGACTTCACAATTTGCCATTATGCGGGTGATGTCACTTATCAAACTGAATTGTTCCTGGACAAGAACAAAGATTACGTTGTTGCAGAACACCAGGCACTTCTTTATGCGTCAAAATGCCCCTTTGTGTCTGGGTTATTCCCCCCTTCACCTGAGGAATCGTCCAAACAATCGAAGTTTTCTTCAATAGGTTCCCGTTTTAAGCAACAATTGCAAGCCCTACTTGAAACTCTCAGTGCCACCGAGCCGCACTACATTCGTTGTGTTAAACCCAATAATCTTCTTAAGCCAGCAATATTTGAAAATAAAAATGTTTTGCAGCAATTGCGATGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCTGGTTATCCGACTAGGAAAACATTTGATGAGTTTGCAGATCGATTCGGACTTCTTGCACCGGAAGCTATAGACAGGAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTCTGGAGAAGGTTGGACTTAAGGGCTATCAGATTGGTAAAACCAAAGTGTTTCTTCGAGCTGGTCAAATGGCAGATCTAGATACTCGTAGAAGTGAGGTCTTAGGAAAGTCAGCTAGCATTATTCAGAGAAAAGTTCGCACCTTTTTGGCCAGCCGAAGTTTTATCTCAATACGCTTGTCTGCTATAAAGATTCAAGCTGCATGCAGAGGACAACTTGCTCGGCAAGTTTATGAAGGATTGCGACGGCAGGCTTCTAGTCTGATGATTCAGAGATTTTTCCGCATGCATGTTGCCAAGAAGGCGTATAAAGAATTGTATAGCTCGACTGTTTCCCTTCAGACTGGTATGCGAGGGATGGCTGCTCGTAGTGAGCTGCGCTTTAGGAAGCAAACCAGGGCTGCTATTGTCATTCAGAGCCACTGCAGGAAATACCTAGCACTCCATCGTTTTACGAACTTAAAGAAGGCAACAATTGCAACACAATGTGCATGGAGAGGAAAAGTTGCTCGACAAGAATTAAGAAAGCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTACAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGATCTCACATTGAGGTTGCAGCTAGAAAAACGCTTGAGGGTTGACATTGAAGAATCAAAAACACAAGAAAATGAAAAACTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACCAAGTTATTACTTCAAAAGGAACGAGAGGCTGCAAAAAGAGAAGCTGAGAGAGCACCTGTCATACAGGAGGTTCCTGTTGTTGACCATGCTCTGTTGGAGAAGCTAACTAGTGAAAATGAGAAACTCAAGACCCTGGTGAGTTCATTGGAAGAGAAAATTGGTGAAACTGAAAAAAGATACGAAGAGGCAAACAAAATTAGTGAAGAGAGGTTGAAGCAGACTTTGGATGCTGAATCAAAAATAATCCAGTTGAAGACAGCTATGCAGAGGCTCGAAGAGAAATTCTCTGACATGGAATCCGAAAACCAGGTTCTACGGCAACAGTCTCTGCTAAATTCTTCGTCAAAAACAATGTCAGAACACCTTTCTACCCACATATCTGAGCAGAAATTGGAAAATGGTCACCATGTGGGTGAAGATCATAAAATTTCTGAAGCACAGAGTGTCACACCTGTGAAGAAGTTTGGTACAGAATCTGATGGGAAATTGAGGAGATCCTTCATTGAGCGTCAGCATAATCAAGATGACAATGATCTTATGGCCTATTGGCTGTCAAATATGTCTGCACTATTGTTTTTGCTCCAGCAAAGTCTGAAATCTGGTGGTTCTGCTGATGCAACTCCTGTAAAAAAACCGCCAAATCCAACGTCTCTCTTTGGGAGAATGACAATGGGTTTTCGCTCATCTCCTTCTTCTGCCAGCCTTCCTACCCCAGAGGTTGTACGCAAGGTAGAAGCTAAATATCCTGCTTTGCTTTTCAAGCAACAGCTCACAGCCTATGTGGAGAAAATATATGGTATCCTTAGGGACAACTTGAAGAAAGAATTGGCATCATTGCTTTCTTTATGTATCCAGGCGCCAAGAACATCTAAGGGAGTCTTACGTTCTGGCCGATCCTTTGGTAAAGATTCGCCCATGGGTCATTGGCAGAGCATTATAGAATCACTGAATACTCTCCTCTGTACTCTGAAAGAAAACTTTCATGATGTAGGTCTTCTTCTGCGTCGTGATTGTTGCACATTTACCAATGGGGAATATGTGAAAGCTGGTTTAGCAGAATTGGAGTTGTGGTGCTGCCAAGCAAAAGAGGAGTATGCAGGTTCATCTTGGGATGAGCTTAAGCACATTAGACAAGCCGTTGGGTTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATTAATGATTTATGCCCAATCATGAGTGTCCAGCAGCTGTACAGAATATGTACACTTTATTGGGATGCTAACTACAATACTCGAAGCGTATCACCAGATGTCCTTTCAAGCATGAGAGTGCTTATGGCTGAGGACTCTAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTAGATGACCTCTCTACATCACTGCAAGAGAAGGATTTCTCAGACATGAAACCGGCTGATGAGCTGCTTGAGAATCCCGCCTTCCAATTTTTAAATGAGTAG | 4503 | 0.4175 | MAYQEFSAIQGGYNRDSTVSFELFTGAVAQRARSRTSARFSIRSINSKWGPIIVDGVFCYLTKLLEATGSSNLRHIVSEAYCSELVHELLTDVDSVFTHFFSDIMVTKVDLGSHECPMHTCHAYSAATANPVVGSHVWVEDSQEAWIDGEVLEVKGGEIKVLCTSGKTVVVKPSSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIRLPHLYDSHMMAQYKGAGFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRTNNAAEGRTVEQKVLESNPVLEAFGNAKTDIQKFKLGNPREFHYLNQTNCFELEGVDESKEYRDTRRAMDVVGISSEEQDAIFRVVAAILHLGNIEFAKGTEMDSSVPKDEKSWFHLHTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPESAALSRDALAKIVYTRLFDWLVDKINNSIGQDPDSTSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFADRFGLLAPEAIDRSSDEVTACKRILEKVGLKGYQIGKTKVFLRAGQMADLDTRRSEVLGKSASIIQRKVRTFLASRSFISIRLSAIKIQAACRGQLARQVYEGLRRQASSLMIQRFFRMHVAKKAYKELYSSTVSLQTGMRGMAARSELRFRKQTRAAIVIQSHCRKYLALHRFTNLKKATIATQCAWRGKVARQELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDIEESKTQENEKLQSALQEMQLQFKETKLLLQKEREAAKREAERAPVIQEVPVVDHALLEKLTSENEKLKTLVSSLEEKIGETEKRYEEANKISEERLKQTLDAESKIIQLKTAMQRLEEKFSDMESENQVLRQQSLLNSSSKTMSEHLSTHISEQKLENGHHVGEDHKISEAQSVTPVKKFGTESDGKLRRSFIERQHNQDDNDLMAYWLSNMSALLFLLQQSLKSGGSADATPVKKPPNPTSLFGRMTMGFRSSPSSASLPTPEVVRKVEAKYPALLFKQQLTAYVEKIYGILRDNLKKELASLLSLCIQAPRTSKGVLRSGRSFGKDSPMGHWQSIIESLNTLLCTLKENFHDVGLLLRRDCCTFTNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPIMSVQQLYRICTLYWDANYNTRSVSPDVLSSMRVLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLNE | 1500 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian3g01772 | 1500 | Pfam | IQ calmodulin-binding motif | 853 | 870 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | Pfam | IQ calmodulin-binding motif | 922 | 941 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | Pfam | IQ calmodulin-binding motif | 898 | 917 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | Pfam | IQ calmodulin-binding motif | 827 | 844 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | Gene3D | - | 733 | 796 | - | - | |
| Vian3g01772 | 1500 | ProSiteProfiles | IQ motif profile. | 897 | 926 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 378 | 667 | - | - | |
| Vian3g01772 | 1500 | ProSiteProfiles | IQ motif profile. | 920 | 949 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | Coils | Coil | 1038 | 1072 | - | - | |
| Vian3g01772 | 1500 | PRINTS | Myosin heavy chain signature | 548 | 576 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01772 | 1500 | PRINTS | Myosin heavy chain signature | 495 | 523 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01772 | 1500 | PRINTS | Myosin heavy chain signature | 216 | 235 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01772 | 1500 | FunFam | unconventional myosin-Va | 900 | 947 | - | - | |
| Vian3g01772 | 1500 | CDD | MYSc_Myo11 | 200 | 786 | IPR036018 | - | |
| Vian3g01772 | 1500 | Gene3D | - | 899 | 948 | - | - | |
| Vian3g01772 | 1500 | Gene3D | - | 851 | 898 | - | - | |
| Vian3g01772 | 1500 | Gene3D | - | 801 | 850 | - | - | |
| Vian3g01772 | 1500 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 132 | 181 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01772 | 1500 | SMART | iq_5 | 848 | 870 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | SMART | iq_5 | 800 | 822 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | SMART | iq_5 | 871 | 893 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | SMART | iq_5 | 896 | 918 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | SMART | iq_5 | 919 | 941 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | SMART | iq_5 | 823 | 845 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | Pfam | Myosin head (motor domain) | 188 | 332 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01772 | 1500 | Pfam | Myosin head (motor domain) | 335 | 786 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01772 | 1500 | SMART | MYSc_2a | 181 | 799 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01772 | 1500 | Coils | Coil | 943 | 1016 | - | - | |
| Vian3g01772 | 1500 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 853 | 949 | IPR027417 | - | |
| Vian3g01772 | 1500 | Pfam | DIL domain | 1338 | 1425 | IPR002710 | - | |
| Vian3g01772 | 1500 | Gene3D | - | 505 | 689 | - | - | |
| Vian3g01772 | 1500 | Gene3D | Kinesin motor domain | 136 | 334 | IPR036961 | - | |
| Vian3g01772 | 1500 | ProSiteProfiles | Dilute domain profile. | 1171 | 1446 | IPR002710 | - | |
| Vian3g01772 | 1500 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 160 | 851 | IPR027417 | - | |
| Vian3g01772 | 1500 | ProSiteProfiles | Myosin motor domain profile. | 186 | 798 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vian3g01772 | 1500 | Gene3D | Kinesin motor domain | 489 | 728 | IPR036961 | - | |
| Vian3g01772 | 1500 | FunFam | Myosin 2 | 378 | 490 | - | - | |
| Vian3g01772 | 1500 | FunFam | Class V myosin | 505 | 647 | - | - | |
| Vian3g01772 | 1500 | ProSiteProfiles | IQ motif profile. | 849 | 878 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | ProSiteProfiles | IQ motif profile. | 872 | 901 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | SMART | DIL_2 | 1317 | 1428 | IPR002710 | - | |
| Vian3g01772 | 1500 | ProSiteProfiles | IQ motif profile. | 824 | 853 | IPR000048 | GO:0005515 | |
| Vian3g01772 | 1500 | FunFam | unconventional myosin-Va | 851 | 899 | - | - | |
| Vian3g01772 | 1500 | Coils | Coil | 1080 | 1114 | - | - | |
| Vian3g01772 | 1500 | PANTHER | MYOSIN | 335 | 1434 | - | - | |
| Vian3g01772 | 1500 | Gene3D | - | 335 | 376 | - | - | |
| Vian3g01772 | 1500 | Pfam | Myosin N-terminal SH3-like domain | 134 | 176 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian3g01772 | Vian-Chr3 | 20085261 | 20106557 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian3g01772 | 127 | 1499 | Myosins gene family | AT5G43900 | 66.711 | 0.0 | 1988 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian3g01772 | K10357 | - | cpap:110811579 | 2084.3 |