Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01771 ATGATTGATGAAGAAGAAGAAATCAGATGCAATGAAGATAAAGATTATAGTCAATACAAAACGGAGGGGAAGGAGAAGAAGAAGAAAAAGCTGAGTGATGAAGGCAAAAGTATGGATTATATTGAATTTGAAAGAAATGAAGGTGAAGATGATGCCCAAAGTAAGAAGAGGAAGAAGAAAAAGTTGAGTACAGAAAGAAAAAGTAAGGAGTATGAAGTCTTTGAAAAGAATGAAGGTGAAGGTGATGCCGAAGGTGATAAGGAGAGGAAGAAGAAAAAACTGTGTGGAGAAGACAAACGTAAGGAGTATAATGAATTTGAAAACAATGAAGGTGAAGATGATGCCCTGTGTAGGAAGAGAAAGAAGAAAAAATTGAGTAAAGAAAGCAAAAGTAAGGAGTACAACGTCTTTGAAAGGAATGAAGGTGAAGATGATGTAAAAAATAAGAAGAAGAAGAAGAAAAACAAACTGAGTGAAGAAGCCAAAAGTAAGGAGTATAATGAATTTGAAAGCAATGAAGTTGAAGACAATGCCCAAGGTAAGAAGAAAAAATTGAGTAAAGAAAGCAAAAGCGAGGAGTATAATGTCTTTAAAAGGAATGGAGGTGAAAGCTATTCCGAAGGTAAGAAGAGGAAGAAGAAAAAACTGAGTGAAGAAGGCAAAAGTAAGGAGTATAATGAATTTCAAAACAATGACGGCGAAGATGATGCACAAGGTAGGAAGGGGGAGAAGAAAAAATATAGTAAACAAAGCAAAAGCGAGGAGGATAATGTCTTTGAAAGGAATGAAGGTGAAGTTGATGCCAAAGGTAAGAAGAAGAAGAAAAGAAAACATGGTGAAGATGGCAAAAGTAAGGAGTATAATGAGTTTGAAAACAACGAAGATGAAGATGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAAATGAGTAAAGAAAACAAAAGTAAGGAGTATAATGTATTTCAAAGGAATGAAGGTGAAGATGATTTTGAAGGTAGGAAGAGTAAGAAGGAAAAAATGATTGAAGATAACAAAAGCAAGAATGAAAATATGATGACAAAGAAGGAAACCAAGGCAGATAATGACGAGTCTCCTAATCCTGCATGCAGTGGATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGAGGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACTAGAAGAAGATGAGCAGATTAAATCGGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAGTTCTCATCCGGAAGTTAGATCTTGTTGGAATGAAATTGCAGCAGCCTTACCCCACAGGCCAAAGAATAGTGTGTATACTCGTGCCCATATTTTGTTTGAAAGGAGTGAGATGCGAAAGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAACAACATGGATCTAATTGGAGACAAGTAGCTGACGCATTGGGAAAAAATCGAATTCATGTGAAGGATGCATGGCGTAGAGTGAAATTAAGAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACCTGGACCTACGTGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCCATTGGTGATAAGTTGGTCACTAGAACCTCCGTGAGCTGTTGCCACAAGTGGTATGATAAATTAAGATCACCAATGGTTGCTACTGGTGCATGGAGTGATACTGATGACTATCGCTTGGTCGATGCTTTATATAACTTGGATGCGTGCTGCACGGAGGAGGTGGATTGGGACGATCTGCTTGAGCACAGGACTGGTGAGGCATGTAGAAAACGATGGAACCAAATTGTCCGATATATTGGAGACCATGGAGGGAAGTCATTTTCTGAGCAGGTTGAGATTCTTGCAAAAAGATATTGCCCCAACTTATTGGAAGTAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA 2031 0.3836 MIDEEEEIRCNEDKDYSQYKTEGKEKKKKKLSDEGKSMDYIEFERNEGEDDAQSKKRKKKKLSTERKSKEYEVFEKNEGEGDAEGDKERKKKKLCGEDKRKEYNEFENNEGEDDALCRKRKKKKLSKESKSKEYNVFERNEGEDDVKNKKKKKKNKLSEEAKSKEYNEFESNEVEDNAQGKKKKLSKESKSEEYNVFKRNGGESYSEGKKRKKKKLSEEGKSKEYNEFQNNDGEDDAQGRKGEKKKYSKQSKSEEDNVFERNEGEVDAKGKKKKKRKHGEDGKSKEYNEFENNEDEDDAQGKKRKKKKMSKENKSKEYNVFQRNEGEDDFEGRKSKKEKMIEDNKSKNENMMTKKETKADNDESPNPACSGLSKPKRVTFSDQVEVCCDGLVRGKRFTLEEDEQIKSAVYNFIESRGLGDEGLDMVLHCSSHPEVRSCWNEIAAALPHRPKNSVYTRAHILFERSEMRKWTPEEYEFLRKVKEQHGSNWRQVADALGKNRIHVKDAWRRVKLRNTNKGRWTQEEYQKLFDLVNLDLRVRASQGYRKSKHGMLRDNIGWEAIGDKLVTRTSVSCCHKWYDKLRSPMVATGAWSDTDDYRLVDALYNLDACCTEEVDWDDLLEHRTGEACRKRWNQIVRYIGDHGGKSFSEQVEILAKRYCPNLLEVREAFDAKPLVC 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01771 676 SUPERFAMILY Homeodomain-like 468 528 IPR009057 -
Vian3g01771 676 MobiDBLite consensus disorder prediction 158 270 - -
Vian3g01771 676 Pfam Myb-like DNA-binding domain 470 528 - -
Vian3g01771 676 Coils Coil 45 65 - -
Vian3g01771 676 MobiDBLite consensus disorder prediction 11 58 - -
Vian3g01771 676 MobiDBLite consensus disorder prediction 280 303 - -
Vian3g01771 676 CDD SANT 519 578 IPR001005 -
Vian3g01771 676 Gene3D - 471 509 - -
Vian3g01771 676 PANTHER GB|AAC33480.1 17 675 - -
Vian3g01771 676 Coils Coil 147 167 - -
Vian3g01771 676 MobiDBLite consensus disorder prediction 312 362 - -
Vian3g01771 676 ProSiteProfiles Myb-like domain profile. 583 636 IPR001005 -
Vian3g01771 676 ProSiteProfiles Myb-like domain profile. 469 511 IPR001005 -
Vian3g01771 676 Gene3D - 510 586 - -
Vian3g01771 676 SMART sant 466 513 IPR001005 -
Vian3g01771 676 SMART sant 516 583 IPR001005 -
Vian3g01771 676 SMART sant 587 638 IPR001005 -
Vian3g01771 676 SMART sant 393 464 IPR001005 -
Vian3g01771 676 MobiDBLite consensus disorder prediction 128 150 - -
Vian3g01771 676 MobiDBLite consensus disorder prediction 1 375 - -
Vian3g01771 676 ProSiteProfiles Myb-like domain profile. 512 581 IPR001005 -
Vian3g01771 676 MobiDBLite consensus disorder prediction 65 119 - -
Vian3g01771 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 468 515 IPR017930 -
Vian3g01771 676 SUPERFAMILY Homeodomain-like 561 640 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01771 Vian-Chr3 20063749 20065779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01771 470 637 MYB Transcription Factor Family AT5G02320 25.581 6.29e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian3g01771 Myb_DNA-bind_6 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01771 - - var:108338141 905.59