Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01760 ATGTTCTGTTTCTCATATGGCTTTGCGGCTGCAGCGAATGATGAAGCTTCTGCTTTACTCTCTATAAAAGCAGGTCTTATTGATCCACTGAATAGCCTGCTTGATTGGAAATTGTTGGTCAAAGCAAAAGGAAAGGGTGCAGCTCATTGTAACTGGACTGGTGTCCAGTGCAACTCAGCTGGAGTAGTAGATAGCCTTGATCTCTCCCGCATGAATCTGAGTGGCATTGTGTCCAATGAGATACAAAGTCTAAAGAGTCTTACTTCTCTCAACTTGTGTTGCAACGAATTTTCCTCTTCATTATCATCCATAGCCAATCTCACCACACTCAAGACTCTTGATGTGAGCCAGAATTTCTTCACTGGTGACTTTCCATTAGGCCTTGGAAAGGCATTGGGACTTACGACCTTAAATGCATCCAGCAACAATTTCTCTGGCTTTCTTCCTGAGGATCTGGGAAATGTCTCTTCCTTGGAGACTTTAGATTTCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCAAAATCCTTCAGTAACTTGCACAGGCTGAAGTTCCTCGGTTTATCTGGGAATAATCTCACTGGAGAAATCCCTGGAGAGTTGGGCCAACTTTCATCACTGGAGTGCTTGATCCTTGGATATAATGAATTTGAAGGTGGTATTCCAGCTGAGTTTGGAAATCTGACCATGTTAAAGTATCTTGATTTAGCAGAAGGCAATCTTGGTGGTGAAATTCCAGCCGAGTTGGGAAAGCTCAAACTGTTGAATACAGTTTTCTTGTACAAAAACAAATTAGAAGGCAAGATTCCACCGACAATTGGCACCATGACTTCATTGGTGCAGCTGGATCTGTCAGACAACATGTTATCAGGAAATATACCGGCTGAAATAAGTCAGCTGAAGAATTTACAGCTTCTGAACTTCATGCGCAACCGGCTATCTGGTCCTGTGCCTTCTGGCCTTGGAGACTTGCCTCAACTTGAGGTGCTTGAGCTATGGAACAATTCCTTGTCAGGGTCATTGCCTAGAAACCTTGGCAAGAATTCACCGTTGCTGTGGTTGGATGTATCATCTAATTTGCTTTCCGGTGAGATTCCAGAAACTCTTTGCACCAAAGGCTATCTCACCAAGCTCATACTTTTCAATAATGCCTTCATGGGTCCAATTCCGGCAAGCCTATCAACATGTCCTTCAATTGTCCGTGTTCGAATTCAGAACAATTTTCTTTCTGGGACAATACCTGTGGGCCTTGGTAAGCTTAGGAAGCTTCAGAGGTTAGAATTAGCAAACAATAGTCTCACTGGTGGAATTCCTAATGACATTGGTTCTTCTACATCCCTTTCTTTCATTGATTTTTCCACAAACAATCTCCACTCTTCTCTTCCTTCAAACATTCTTTCCATTTCAAATCTGCAAACTTTAATTGTCTCGAACAATAACTTGAGAGGTGAAATCCCAGACGAATTCCAGGATTGTCCCTCACTAGGTGTCCTTGATCTCTCACGAAATGAACTCTCTGGAGGCATTCCAGCAAGCCTTGCATCATGCCAGAAATTGGTAAACTTGAACCTACAGAATAACCAATTAACGGGTGAAATCCCAAAAGCATTAGCAAGCATGCCTACATTAGCAATTCTTGATCTTGCCAACAACTCTCTGATTGGTCAAATACCTGGAAACTTTGGTAGCTCTCCAGCTTTGGAAACATTCAACGTCTCGCACAACAAGTTAAAAGGTCCTGTCCCAGAAAACGGAGTGCTAAGAACAATAAACCCAAATGATCTTGCGGGGAATGCTGGCTTGTGTGGTGCTGTCCTCCCCCCATGTGTCCAAATCTCTGCATATCCGTTAAGGCGTGGGAATTCATATCCAAAGCACATTATTGTAGGATGGATCATTGGAATATCATCTATACTAGCCATTGGGGTTACGACTGTGGTAGCAAGATCTTTATACATAAGGTGGTACACTGAGGGATTGTGCTTCCAGGAAAGATTTTATAAGGGTAGGAAGGGGTGGCCATGGAGATTGATGGCCTTTCAGAGGCTTGATTTTACAAGTAGTGACATTTTATCTTGCATTAAGGATACAAATATGATTGGTATGGGAGCGACTGGGGTTGTCTACAAGGCTGAGATACCACAATCTAGTACAATCGTGGCTGTCAAGAAGTTGTGGAGATCAGGATCTGATATCGAAGTAGGAAGCAGTGATGACCTTGTTGGTGAGGTGAATCTTTTAGGGAGGTTAAGGCATAGGAACATTGTTAGACTACTGGGATTTCTTTACAATGACGCTGATGTGATGATAGTTTATGAATTTATGCACAATGGAAACCTTGGAGATGCTCTGCATGAATATGGATACTCCTTGAAAGTGGATGAAAAGATTGACATTTACAGTTATGGAGTGGTTCTGTTGGAGCTTCTGACTGGAAAGCGGCCCTTAGAACCAGAGTTTGGAGAATCTATAGACATAGTAGGGTGGATTAGAAGGAAGATAGACAAAAAATCTGCACATGAAGCATTAGACCCGAGTGTAGGAAACTGCAGGTATGTTCAAGAAGAGATGATTTTAGTTCTCAAGATAGCACTTCTATGCACTGCCAAGTTCCCCAAGGACAGACCCTCCATGAGGGATGTTAGAATGATGCTTGGAGAGGCAAAGCCTAGGAGAAAAAGTGGCAGGAGCAGTGAAACATTTTCAGCTAACAAGGAAATGCCAGCTAATATTAGCAAACCAGCAGTTAATGGCCTTCTTTAG 2760 0.4268 MFCFSYGFAAAANDEASALLSIKAGLIDPLNSLLDWKLLVKAKGKGAAHCNWTGVQCNSAGVVDSLDLSRMNLSGIVSNEIQSLKSLTSLNLCCNEFSSSLSSIANLTTLKTLDVSQNFFTGDFPLGLGKALGLTTLNASSNNFSGFLPEDLGNVSSLETLDFRGSFFEGSVPKSFSNLHRLKFLGLSGNNLTGEIPGELGQLSSLECLILGYNEFEGGIPAEFGNLTMLKYLDLAEGNLGGEIPAELGKLKLLNTVFLYKNKLEGKIPPTIGTMTSLVQLDLSDNMLSGNIPAEISQLKNLQLLNFMRNRLSGPVPSGLGDLPQLEVLELWNNSLSGSLPRNLGKNSPLLWLDVSSNLLSGEIPETLCTKGYLTKLILFNNAFMGPIPASLSTCPSIVRVRIQNNFLSGTIPVGLGKLRKLQRLELANNSLTGGIPNDIGSSTSLSFIDFSTNNLHSSLPSNILSISNLQTLIVSNNNLRGEIPDEFQDCPSLGVLDLSRNELSGGIPASLASCQKLVNLNLQNNQLTGEIPKALASMPTLAILDLANNSLIGQIPGNFGSSPALETFNVSHNKLKGPVPENGVLRTINPNDLAGNAGLCGAVLPPCVQISAYPLRRGNSYPKHIIVGWIIGISSILAIGVTTVVARSLYIRWYTEGLCFQERFYKGRKGWPWRLMAFQRLDFTSSDILSCIKDTNMIGMGATGVVYKAEIPQSSTIVAVKKLWRSGSDIEVGSSDDLVGEVNLLGRLRHRNIVRLLGFLYNDADVMIVYEFMHNGNLGDALHEYGYSLKVDEKIDIYSYGVVLLELLTGKRPLEPEFGESIDIVGWIRRKIDKKSAHEALDPSVGNCRYVQEEMILVLKIALLCTAKFPKDRPSMRDVRMMLGEAKPRRKSGRSSETFSANKEMPANISKPAVNGLL 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01760 919 FunFam Leucine-rich repeat receptor protein kinase EMS1 268 350 - -
Vian3g01760 919 SUPERFAMILY L domain-like 62 338 - -
Vian3g01760 919 Gene3D Ribonuclease Inhibitor 370 609 IPR032675 -
Vian3g01760 919 Gene3D Transferase(Phosphotransferase) domain 1 778 908 - -
Vian3g01760 919 MobiDBLite consensus disorder prediction 884 898 - -
Vian3g01760 919 Gene3D Phosphorylase Kinase; domain 1 693 777 - -
Vian3g01760 919 Pfam Leucine Rich Repeat 421 441 IPR001611 GO:0005515
Vian3g01760 919 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 12 166 - -
Vian3g01760 919 ProSiteProfiles Protein kinase domain profile. 693 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g01760 919 SUPERFAMILY RNI-like 267 578 - -
Vian3g01760 919 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 239 884 - -
Vian3g01760 919 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 167 267 - -
Vian3g01760 919 Gene3D Ribonuclease Inhibitor 263 369 IPR032675 -
Vian3g01760 919 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 351 612 - -
Vian3g01760 919 Pfam Leucine rich repeat 468 528 IPR001611 GO:0005515
Vian3g01760 919 Pfam Protein tyrosine and serine/threonine kinase 696 792 IPR001245 GO:0004672|GO:0006468
Vian3g01760 919 Gene3D Ribonuclease Inhibitor 11 165 IPR032675 -
Vian3g01760 919 Gene3D Ribonuclease Inhibitor 166 262 IPR032675 -
Vian3g01760 919 FunFam MDIS1-interacting receptor like kinase 1 693 777 - -
Vian3g01760 919 Pfam Leucine rich repeat N-terminal domain 12 58 IPR013210 -
Vian3g01760 919 MobiDBLite consensus disorder prediction 884 906 - -
Vian3g01760 919 ProSitePatterns Protein kinases ATP-binding region signature. 699 723 IPR017441 GO:0005524
Vian3g01760 919 SMART LRR_typ_2 323 347 IPR003591 -
Vian3g01760 919 SMART LRR_typ_2 84 107 IPR003591 -
Vian3g01760 919 SMART LRR_typ_2 419 443 IPR003591 -
Vian3g01760 919 SMART LRR_typ_2 467 490 IPR003591 -
Vian3g01760 919 SMART LRR_typ_2 275 299 IPR003591 -
Vian3g01760 919 SMART LRR_typ_2 179 203 IPR003591 -
Vian3g01760 919 SUPERFAMILY Protein kinase-like (PK-like) 691 885 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01760 Vian-Chr3 19954511 19957750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01760 736 893 Receptor kinase-like Gene Family AT1G08590 52.500 1.28e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian3g01760 PK_Tyr_Ser-Thr 2.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01760 - - gmx:100788430 1348.95