Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g01753 ATGACAAATAGTCTGGTTTGGGTATCAAAAACAAAAATCAAGAAAATAATGGAAGCACATCCTACTTTCTCCATTGAAAGATCAAAGCAACTCAATAGCATGGGGATGTCTGGAGCACTTTCTTCATCTTTGTCAATCCTTCCAATACCCACAGAAGATATGTATCCTAGGCTGCCTGAATCACAATTGGATATTGTAGATCAAGAACTTATGACAAGACCTTATACTCATTCAAGTTATTTGAATTCCAACGGAGTAGTTGGGCATATTTTTTCGTCTTCCTCTGCAAATTCAATTGACCTTCATCACTCATCTCTTTCACCTGATGAAAAAAACTCTACTAACGCTCATTTTATTTCACAATCATCAACCAACATTGCCCAATTTCCATTATCATATTCTTCGAGTACTGCACCACCAACTTCAGCAACACCAACCCATTTTTCCAAAGAAAACAGTGCTTCCTGGCATACAGAGTCCCTGCCAAGTTTTCTGGATTTTCCTGCACATGACTCAATGGACGATAATAGGGTAGAAAGTAGTGATTGCCCTATAATGGCATCCGAGGAGTATTCTAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTCACTGACAACATTCGAGACATTGAGCCAAAGGTGCCATTCCAGGTTGCAAAACCACTTTCACAGTTTCCAGGACATCAATCCCAAGGTCTACAACAACTTCCTGCTTCATATGGAGACAATTGCTCTGGAGCTACCCTCTCCTCCTCAGCAAATTCTACTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCACGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGGGGAAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTGAAAAGCCATTTGCAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAGTTGCGGAGAAAAAAGCAGGTTCCATTGAAGAGATGTCATCTCTAGATTTAAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTGCAGCTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGTAAATCTGAAACTGAAGCGTTGAAGGCATCATCATCTACCATTGAGAGTCAATCTGGAGTATCTCCGAATGCCACGAGAGACTTCCCGGTCAAAAATGTTTTGGAAGCAGCATCACAAGTGGACCATTGTAGGTCAGGACCTGATCAAGCTAACCGAAGTATCACAGTTGAGGAAGGCTCGCAGGAAAAGGGTCGGAATCCTGATTCTCCCAAAACTCAACATGGTATTGCTAGTGATGATAGTGCACAAGCCCCAAAACGTCAAAGAACAGAGTAA 1491 0.4239 MTNSLVWVSKTKIKKIMEAHPTFSIERSKQLNSMGMSGALSSSLSILPIPTEDMYPRLPESQLDIVDQELMTRPYTHSSYLNSNGVVGHIFSSSSANSIDLHHSSLSPDEKNSTNAHFISQSSTNIAQFPLSYSSSTAPPTSATPTHFSKENSASWHTESLPSFLDFPAHDSMDDNRVESSDCPIMASEEYSKQNDWQEWAERLISDDDTLTSNWDDLLTDNIRDIEPKVPFQVAKPLSQFPGHQSQGLQQLPASYGDNCSGATLSSSANSTPAKSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVAEKKAGSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSETEALKASSSTIESQSGVSPNATRDFPVKNVLEAASQVDHCRSGPDQANRSITVEEGSQEKGRNPDSPKTQHGIASDDSAQAPKRQRTE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g01753 496 Pfam Myb-like DNA-binding domain 277 328 IPR001005 -
Vian3g01753 496 SUPERFAMILY Homeodomain-like 272 329 IPR009057 -
Vian3g01753 496 Coils Coil 363 383 - -
Vian3g01753 496 FunFam Myb family transcription factor 274 332 - -
Vian3g01753 496 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 257 479 IPR044848 GO:0003700
Vian3g01753 496 MobiDBLite consensus disorder prediction 131 151 - -
Vian3g01753 496 MobiDBLite consensus disorder prediction 412 431 - -
Vian3g01753 496 Gene3D - 274 333 - -
Vian3g01753 496 MobiDBLite consensus disorder prediction 412 430 - -
Vian3g01753 496 Pfam MYB-CC type transfactor, LHEQLE motif 360 407 IPR025756 -
Vian3g01753 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 272 332 IPR017930 -
Vian3g01753 496 NCBIfam myb-like DNA-binding domain, SHAQKYF class 275 329 IPR006447 GO:0003677
Vian3g01753 496 MobiDBLite consensus disorder prediction 444 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g01753 Vian-Chr3 19851281 19857336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g01753 48 416 G2-like Transcription Factor Family AT4G28610 49.206 3.91e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian3g01753 Myb_DNA-binding 9.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g01753 - - gmx:100793593 768.459